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The map label for this gene is ydiF [H]

Identifier: 39997191

GI number: 39997191

Start: 2299353

End: 2300990

Strand: Reverse

Name: ydiF [H]

Synonym: GSU2093

Alternate gene names: 39997191

Gene position: 2300990-2299353 (Counterclockwise)

Preceding gene: 39997192

Following gene: 39997190

Centisome position: 60.33

GC content: 64.04

Gene sequence:

>1638_bases
ATGATCCATCTTTCGAACATCACCAAACAACACGGCAACCAGCTTCTGTTCCGCGACGCCAGCTTCCAGATCCTTCCCGG
CAGCCGCACCGGCCTGGTGGGCCCCAACGGCGCCGGCAAGACGACCATCTTCCGGATCATCACCGGCGAGGAGGAGGTGG
ACGCCGGCGAGATCACCTGCGCCAAGCGGACCTCCATCGGCTATTTTTCGCAGGACGTGGGGGAAATGGCCGGCCGCACG
GCTCTGGAGGAGGTCATGGCGGTCTCGGCCGAGACCGTGCGCCTGGCGGCGGAGCTGAAGGAGATGGAGGCGGCCATGGC
CGAGCCCATGGACGATGATGCCATGGCGGCCCTGCTGGAGCGGTACGGCACCGCCATGGAGGAGTTCGAGCACCGGGGCG
GTTACGACCTGGACACCCGGGCGCGGACGATTCTGACCGGGCTCGGCATCGGCCCGGACCGTTACGACCATCCGGTGGAG
TCCTTCAGCGGCGGCTGGAAGATGCGCATTGCCCTGGCCGGCATTCTGACCCTGCAACCCGATGTGCTGCTCCTGGACGA
GCCCACCAACCACCTGGACGTGGAGTCGATTATCTGGCTCGAAGAGTGGCTGGCCGGAGAGTTCACGGGCGCACTGCTCA
TGACGAGCCACGACCGGGACTTCATGAACCGGATCGTGACACGCATTATCGAAGTGGCCGATAAGACCGTCACCACCTAC
GGCGGCAATTACGATTTCTACGAGCGGGAGCGGGACATCCGCCGCGAGCAGCTGCTGGCCAGCCACAAGCGGCAGCAGGA
GATGCTGGCCAAGGAAGAGGAGTTCATTGCCCGCTTCGCGGCCCGGGCATCCCATGCGGCCCAGGTCCAGTCACGGGTGA
AGAAGCTCGAAAAGATAGATCGGATCGAGATTCCTCCCGAGGAACGGGTGATCCGGTTCGAGTTCAACGACCCCCCTCGC
AGCGGCGACGACGTGGCCGTGTTCAACGGGCTCGCCAAGAGCTGGAGCCTGCCGGGAGGCGGCGAAAAATCAGTCTTCAG
CGGCGTGTCCGGCGTGATCCGCCGCCAGAACAAGATCGCCGTGGTTGGGGTCAATGGCGCCGGCAAGTCCACCTTCCTCA
AGGTCCTGGCCGGCCGGACCGAGCCCACCGACGGCAGCGTGGCCCTGGGCGCCAATGTGTCCCTGGGCTACTTCAGCCAG
CACGCCATGGAACTGCTCGATCCGAAAAAGACCGTATTCGAGACCGTGCAGGACGCCATGCCCCTGGCGACCATCGGCGT
GATCCGCAACCTGCTGGGGGCCTTTCTCTTCTCGGGCGATGCGGTGGACAAGCGCATCGAGAATCTCTCCGGCGGCGAGA
AAAGCCGGGTGGTGCTGGCCACGCTCCTGGCCCGGCCCCTCAATTTCCTGGTGCTGGACGAGCCGACCAACCACCTGGAT
ATCCGTTCGCGGGAGATTCTGCTGGACGCGCTGCAGAACTTTACCGGAACCGTGGTGCTGGTGAGCCATGACCGCCACTT
CCTCCGGCTGCTGGTGGACCGGGTGTTCGAGATCGATCATGGTGAAATGCGGATCTACGAAGGGAATTACGGCTACTATC
TCGAAAAATCGCAGCAGCTGCACCTGGCGGCCTGCTGA

Upstream 100 bases:

>100_bases
GGATCGCCGCTCCATGCGTCCCGCCGCACCTCAAAAAACAGTTGTCACCCCGTGCCGGTCGTGATAGGTGAAGCAGTTCA
CTTTTCCGGCAGGAGCGGCA

Downstream 100 bases:

>100_bases
CATTCCCTGCCCGCAAGGAGCATCCCGCATGGCCCTGCCATCCACAGTCCATCGCGCCGTCGTCCAGCTTTCGCACGTGG
ACCGCGGCATCTACGAGACC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MIHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCAKRTSIGYFSQDVGEMAGRT
ALEEVMAVSAETVRLAAELKEMEAAMAEPMDDDAMAALLERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVE
SFSGGWKMRIALAGILTLQPDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIDRIEIPPEERVIRFEFNDPPR
SGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQNKIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGANVSLGYFSQ
HAMELLDPKKTVFETVQDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPTNHLD
IRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNYGYYLEKSQQLHLAAC

Sequences:

>Translated_545_residues
MIHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCAKRTSIGYFSQDVGEMAGRT
ALEEVMAVSAETVRLAAELKEMEAAMAEPMDDDAMAALLERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVE
SFSGGWKMRIALAGILTLQPDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIDRIEIPPEERVIRFEFNDPPR
SGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQNKIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGANVSLGYFSQ
HAMELLDPKKTVFETVQDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPTNHLD
IRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNYGYYLEKSQQLHLAAC
>Mature_545_residues
MIHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCAKRTSIGYFSQDVGEMAGRT
ALEEVMAVSAETVRLAAELKEMEAAMAEPMDDDAMAALLERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVE
SFSGGWKMRIALAGILTLQPDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIDRIEIPPEERVIRFEFNDPPR
SGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQNKIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGANVSLGYFSQ
HAMELLDPKKTVFETVQDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPTNHLD
IRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNYGYYLEKSQQLHLAAC

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=543, Percent_Identity=34.622467771639, Blast_Score=275, Evalue=1e-73,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=33.2096474953618, Blast_Score=247, Evalue=3e-65,
Organism=Homo sapiens, GI10947137, Length=539, Percent_Identity=33.2096474953618, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI69354671, Length=538, Percent_Identity=31.2267657992565, Blast_Score=222, Evalue=9e-58,
Organism=Homo sapiens, GI10947135, Length=538, Percent_Identity=31.2267657992565, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI108773784, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI108773782, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=4e-13,
Organism=Escherichia coli, GI1789751, Length=534, Percent_Identity=35.7677902621723, Blast_Score=335, Evalue=4e-93,
Organism=Escherichia coli, GI1787041, Length=540, Percent_Identity=35, Blast_Score=296, Evalue=2e-81,
Organism=Escherichia coli, GI2367384, Length=530, Percent_Identity=31.6981132075472, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1787182, Length=555, Percent_Identity=32.972972972973, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1788165, Length=195, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081791, Length=190, Percent_Identity=30.5263157894737, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=25.9433962264151, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI145693107, Length=536, Percent_Identity=23.134328358209, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789891, Length=208, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1786703, Length=207, Percent_Identity=29.4685990338164, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=173, Percent_Identity=34.1040462427746, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786398, Length=188, Percent_Identity=30.3191489361702, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=23.7704918032787, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=553, Percent_Identity=33.4538878842676, Blast_Score=258, Evalue=5e-69,
Organism=Caenorhabditis elegans, GI17559834, Length=526, Percent_Identity=31.7490494296578, Blast_Score=243, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17555318, Length=524, Percent_Identity=32.0610687022901, Blast_Score=240, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6320874, Length=544, Percent_Identity=31.9852941176471, Blast_Score=257, Evalue=3e-69,
Organism=Saccharomyces cerevisiae, GI6321121, Length=541, Percent_Identity=30.6839186691312, Blast_Score=254, Evalue=2e-68,
Organism=Saccharomyces cerevisiae, GI6325030, Length=400, Percent_Identity=27.5, Blast_Score=136, Evalue=7e-33,
Organism=Saccharomyces cerevisiae, GI6324314, Length=409, Percent_Identity=25.1833740831296, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=410, Percent_Identity=25.1219512195122, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=34.0148698884758, Blast_Score=288, Evalue=9e-78,
Organism=Drosophila melanogaster, GI24641342, Length=519, Percent_Identity=31.7919075144509, Blast_Score=253, Evalue=2e-67,
Organism=Drosophila melanogaster, GI24642252, Length=518, Percent_Identity=31.2741312741313, Blast_Score=244, Evalue=8e-65,
Organism=Drosophila melanogaster, GI18859989, Length=518, Percent_Identity=31.2741312741313, Blast_Score=244, Evalue=8e-65,
Organism=Drosophila melanogaster, GI24661270, Length=174, Percent_Identity=30.4597701149425, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21355589, Length=174, Percent_Identity=30.4597701149425, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60499; Mature: 60499

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITC
CEECCCHHHHHCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
AKRTSIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDDDAMAALLE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQP
HHCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEEEHEEECC
DVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTTY
CEEEEECCCCCCCHHHHHHHHHHHCCHHCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEC
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RIEIPPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQNKIA
CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEE
VVGVNGAGKSTFLKVLAGRTEPTDGSVALGANVSLGYFSQHAMELLDPKKTVFETVQDAM
EEEECCCCHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
PLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPTNHLD
CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC
IRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNYGYYLEKSQQL
CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCE
HLAAC
EEECC
>Mature Secondary Structure
MIHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITC
CEECCCHHHHHCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
AKRTSIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDDDAMAALLE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQP
HHCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEEEHEEECC
DVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTTY
CEEEEECCCCCCCHHHHHHHHHHHCCHHCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEC
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RIEIPPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQNKIA
CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEE
VVGVNGAGKSTFLKVLAGRTEPTDGSVALGANVSLGYFSQHAMELLDPKKTVFETVQDAM
EEEECCCCHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
PLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPTNHLD
CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC
IRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNYGYYLEKSQQL
CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCE
HLAAC
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]