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The map label for this gene is yciR [C]

Identifier: 39997142

GI number: 39997142

Start: 2239587

End: 2241875

Strand: Reverse

Name: yciR [C]

Synonym: GSU2044

Alternate gene names: 39997142

Gene position: 2241875-2239587 (Counterclockwise)

Preceding gene: 39997143

Following gene: 39997141

Centisome position: 58.78

GC content: 60.81

Gene sequence:

>2289_bases
ATGGCGAATCTCAAGCGATATAATGATGGCCTGTTCAAGCTGGATCTCTGGATCAGGCGACTGCTGACCATTGGTGAGTC
GAACGAACTCTACACAGCCCTCTGCGACGGTGTCTGCGACATCGTGGGGGCCGGTACCGCCGTCTTCACCACCATCGATA
TGCAGGCCGGTACCCTGACCTACATGGCCGCGTCCGGGGGCTGGAATGCCATGGTGAAAGGGCTGGCAGTCCCCATGAAG
AGCGGGAATCTGTGCGCATCAGTGGCCGCCTGCGGTACTCCCCTGCGGATCGACCAGATATCCTCCCGCACTGACTCCTG
CGAACTCTTGCAGGTGATGGACATGGATGCGGCGGTTCTGGTCCCCGTCCTGGAAGAAGGCAGGGTTACGGCCTGTCTGT
CCGCGTTCCGGGTTGGCAATCCGTTCGACCAGATCGACGAGCAGCTTCTTCAGCAGTATGCCCATACCGCATCCATGGTA
CTGCGCACCGTTCGCCTCATGGTCGATCTGCGGCACCACGCCGCCATGCTCGAAGAGGAAAACGATGAGCGCACCAGGGC
CGAGCAGAAGCTGGCCGAAACCAATGTCTTCCTCAATTCCGTGGTTGACGGTGTGGCCGAGCCCATGGTGGTGGTCGGGC
TCGATCGCCGTGTCATCATGACGAACCGGGCGGCTCGCGACTTTTTCCAGATATCCGACGTCGGCAGTGACGAGGCCTGC
CATCGACTTATTCACCATCGCGATACCCCCTGCGTCAGGGAGGAGGGGATGCAGTGCCCCCTGCTCGATGTACGGACGGC
GAAGCGTCCGGTTATTGCCACCCAGGAGCATCGCGACCGGAGCGGGGACAAGCGCGTGGTGGAGGTTATGACGTCTCCGC
TGCTCGGCAGCGACGGCGTAGCCATCGGGATCATCGAGGCGTTCCGCGATATCACTGATCGTCGCCAGGCCGAGGAAACC
ATCCGGCAGATGGCGTACTATGACTCGCTTACCGGACTGCCCAACCGCAGGCTCTTCAACGACCGGCTCCGCCAGTCCCT
TGCCCTGGCACAGCGGAACAAGCGCCTTCTGTCAGTGTTGTTTCTCGATCTGGACCGGTTCAAGCTGATCAACGATACCC
TCGGGCATGCGGTGGGAGACAAGCTCCTCATGCAGGTGGCCAAGCGCCTCAAGGGGGTCTGTCGCCGCGACGGCGACACC
GTGGCCCGGCAGGGGGGCGACGAATTCATCATCAATCTGTCGGTCATTTCCGACGTGAAAGATGCCCTGAAAGTGGCCCA
GAAGATTATCGACAGCCTGCGGACCCCCTTCGTCATTGATGGGCACGAGTTGTTCATCACCACGAGCATCGGCATCAGCG
TGTTTCCCTACGATGGCCGCACGAGCGACGCCTTGGTGAAGAACGCCGATTTTGCCATGTATCGGGCCAAAGAGCAGGGG
CGGAACAACTGCCAGCTCTACACCCCTGAGATGAACAGCAAGGCATTCGAGCGGCTTTCTCTTGAAAACAACCTGCGCAA
GGGGCTTGAGCGGGAAGAGCTGGTGCTCTACTATCAGCCCAAGGTCAACGTTGAGGACGGGCAAATCTCGTGCATGGAGG
CCCTGGTCCGCTGGCAGCACCCCACCATGGGGCTCGTGCCGCCGGCGCGCTTCATCCCCCTCGCGGAAGAAACGGGGCTC
ATCGTTCCCCTGGGCGAATGGGTGTTGAGGACCGCGTGCCGCCAGAACCGGGAGTGGCAAAAGGCCGGCTACCCACCAAT
GCAGGTGGCGGTTAACATTTCTCCCCGCCAGCTCCAACAGGGGAATCTGGTGGATGTGGTGGAGCGGGCACTCTCCGATT
CGGGGCTCGCCCCCCGGTGGCTCGTGCTGGAAGTGACGGAGAGCATCATGATGGACGGCACCGAAAGCACCTTGGCCACC
TTCCGCGTGCTGGAGCGAATGGGAATCCATATCGCCATTGATGATTTCGGTACTGGATATTCATCCCTGCACTATCTGAA
AAAGTTTCCGATCCATGCCCTGAAGATCGACCGTTCGTTCATTCGCGACATCACAACGAACCCTGACGACGAGGCAATTA
CCAGCGCGGTGATCACCATGGCAAAGGGGCTCAATCTGAAAGTGGTTGCCGAAGGTGTTGAAACCGTGGAGCAACTGGAA
GTGCTGCGAGCGCTGCAGTGCACCCACATGCAGGGACACCTCTTCAGCCGCCCCGCGCCGGCGGAGCAGTTCGCGCCGGT
CTTCGGCCGGGCCGCGGGCGCCTACCTCGGTTTCGGAACCTGGTGCTGA

Upstream 100 bases:

>100_bases
TGTCTGTTTTTGGATGGAATTTTGCATTTAATGAATGTTTATGGTTACGGCAGAGTGCACGTAATCCACAGAGCAAAGTC
AGGATAATCTTCCGGGACCT

Downstream 100 bases:

>100_bases
CGGGCGGGCGAAAGCAGGGCGACAAGGGCCGGGCTGGCCGTCTTAACGGTTAATTTATGACGCTACCGATAGTGTTCTAT
CTTTTTTCCTTTGTCCTCGG

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 762; Mature: 761

Protein sequence:

>762_residues
MANLKRYNDGLFKLDLWIRRLLTIGESNELYTALCDGVCDIVGAGTAVFTTIDMQAGTLTYMAASGGWNAMVKGLAVPMK
SGNLCASVAACGTPLRIDQISSRTDSCELLQVMDMDAAVLVPVLEEGRVTACLSAFRVGNPFDQIDEQLLQQYAHTASMV
LRTVRLMVDLRHHAAMLEEENDERTRAEQKLAETNVFLNSVVDGVAEPMVVVGLDRRVIMTNRAARDFFQISDVGSDEAC
HRLIHHRDTPCVREEGMQCPLLDVRTAKRPVIATQEHRDRSGDKRVVEVMTSPLLGSDGVAIGIIEAFRDITDRRQAEET
IRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRNKRLLSVLFLDLDRFKLINDTLGHAVGDKLLMQVAKRLKGVCRRDGDT
VARQGGDEFIINLSVISDVKDALKVAQKIIDSLRTPFVIDGHELFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQG
RNNCQLYTPEMNSKAFERLSLENNLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQHPTMGLVPPARFIPLAEETGL
IVPLGEWVLRTACRQNREWQKAGYPPMQVAVNISPRQLQQGNLVDVVERALSDSGLAPRWLVLEVTESIMMDGTESTLAT
FRVLERMGIHIAIDDFGTGYSSLHYLKKFPIHALKIDRSFIRDITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLE
VLRALQCTHMQGHLFSRPAPAEQFAPVFGRAAGAYLGFGTWC

Sequences:

>Translated_762_residues
MANLKRYNDGLFKLDLWIRRLLTIGESNELYTALCDGVCDIVGAGTAVFTTIDMQAGTLTYMAASGGWNAMVKGLAVPMK
SGNLCASVAACGTPLRIDQISSRTDSCELLQVMDMDAAVLVPVLEEGRVTACLSAFRVGNPFDQIDEQLLQQYAHTASMV
LRTVRLMVDLRHHAAMLEEENDERTRAEQKLAETNVFLNSVVDGVAEPMVVVGLDRRVIMTNRAARDFFQISDVGSDEAC
HRLIHHRDTPCVREEGMQCPLLDVRTAKRPVIATQEHRDRSGDKRVVEVMTSPLLGSDGVAIGIIEAFRDITDRRQAEET
IRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRNKRLLSVLFLDLDRFKLINDTLGHAVGDKLLMQVAKRLKGVCRRDGDT
VARQGGDEFIINLSVISDVKDALKVAQKIIDSLRTPFVIDGHELFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQG
RNNCQLYTPEMNSKAFERLSLENNLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQHPTMGLVPPARFIPLAEETGL
IVPLGEWVLRTACRQNREWQKAGYPPMQVAVNISPRQLQQGNLVDVVERALSDSGLAPRWLVLEVTESIMMDGTESTLAT
FRVLERMGIHIAIDDFGTGYSSLHYLKKFPIHALKIDRSFIRDITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLE
VLRALQCTHMQGHLFSRPAPAEQFAPVFGRAAGAYLGFGTWC
>Mature_761_residues
ANLKRYNDGLFKLDLWIRRLLTIGESNELYTALCDGVCDIVGAGTAVFTTIDMQAGTLTYMAASGGWNAMVKGLAVPMKS
GNLCASVAACGTPLRIDQISSRTDSCELLQVMDMDAAVLVPVLEEGRVTACLSAFRVGNPFDQIDEQLLQQYAHTASMVL
RTVRLMVDLRHHAAMLEEENDERTRAEQKLAETNVFLNSVVDGVAEPMVVVGLDRRVIMTNRAARDFFQISDVGSDEACH
RLIHHRDTPCVREEGMQCPLLDVRTAKRPVIATQEHRDRSGDKRVVEVMTSPLLGSDGVAIGIIEAFRDITDRRQAEETI
RQMAYYDSLTGLPNRRLFNDRLRQSLALAQRNKRLLSVLFLDLDRFKLINDTLGHAVGDKLLMQVAKRLKGVCRRDGDTV
ARQGGDEFIINLSVISDVKDALKVAQKIIDSLRTPFVIDGHELFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQGR
NNCQLYTPEMNSKAFERLSLENNLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQHPTMGLVPPARFIPLAEETGLI
VPLGEWVLRTACRQNREWQKAGYPPMQVAVNISPRQLQQGNLVDVVERALSDSGLAPRWLVLEVTESIMMDGTESTLATF
RVLERMGIHIAIDDFGTGYSSLHYLKKFPIHALKIDRSFIRDITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLEV
LRALQCTHMQGHLFSRPAPAEQFAPVFGRAAGAYLGFGTWC

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=456, Percent_Identity=41.4473684210526, Blast_Score=347, Evalue=2e-96,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=35.7142857142857, Blast_Score=275, Evalue=6e-75,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=30.622009569378, Blast_Score=196, Evalue=5e-51,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=37.9746835443038, Blast_Score=161, Evalue=2e-40,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=37.1308016877637, Blast_Score=156, Evalue=6e-39,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=34.2741935483871, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=34.6774193548387, Blast_Score=144, Evalue=3e-35,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=34.6938775510204, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1786507, Length=264, Percent_Identity=29.9242424242424, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=31.3008130081301, Blast_Score=130, Evalue=5e-31,
Organism=Escherichia coli, GI87082096, Length=252, Percent_Identity=32.9365079365079, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=33.1967213114754, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788381, Length=437, Percent_Identity=26.0869565217391, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081881, Length=212, Percent_Identity=37.7358490566038, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=32.7777777777778, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=35.9116022099448, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=30.8108108108108, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=198, Percent_Identity=35.3535353535354, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=247, Percent_Identity=29.5546558704453, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=234, Percent_Identity=30.3418803418803, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=35.1515151515151, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789650, Length=446, Percent_Identity=21.3004484304933, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=32.1428571428571, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=27.3333333333333, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=32.0987654320988, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 84973; Mature: 84842

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLKRYNDGLFKLDLWIRRLLTIGESNELYTALCDGVCDIVGAGTAVFTTIDMQAGTLT
CCCCCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE
YMAASGGWNAMVKGLAVPMKSGNLCASVAACGTPLRIDQISSRTDSCELLQVMDMDAAVL
EEEECCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHCCCHHHH
VPVLEEGRVTACLSAFRVGNPFDQIDEQLLQQYAHTASMVLRTVRLMVDLRHHAAMLEEE
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDERTRAEQKLAETNVFLNSVVDGVAEPMVVVGLDRRVIMTNRAARDFFQISDVGSDEAC
CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEECCHHHHHHHHHHCCCCHHHH
HRLIHHRDTPCVREEGMQCPLLDVRTAKRPVIATQEHRDRSGDKRVVEVMTSPLLGSDGV
HHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCEECHHHCCCCCHHHHHHHHHCCCCCCCCC
AIGIIEAFRDITDRRQAEETIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRNKRLLSVL
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FLDLDRFKLINDTLGHAVGDKLLMQVAKRLKGVCRRDGDTVARQGGDEFIINLSVISDVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEHHHHHHHH
DALKVAQKIIDSLRTPFVIDGHELFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQG
HHHHHHHHHHHHHCCCEEECCCEEEEEEECCEEEEECCCCCCHHHHCCCCHHHHCCHHCC
RNNCQLYTPEMNSKAFERLSLENNLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQH
CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
PTMGLVPPARFIPLAEETGLIVPLGEWVLRTACRQNREWQKAGYPPMQVAVNISPRQLQQ
CCCCCCCCHHHCCCCCCCCEEEEHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCHHHHCC
GNLVDVVERALSDSGLAPRWLVLEVTESIMMDGTESTLATFRVLERMGIHIAIDDFGTGY
CCHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCH
SSLHYLKKFPIHALKIDRSFIRDITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLE
HHHHHHHHCCCHHEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
VLRALQCTHMQGHLFSRPAPAEQFAPVFGRAAGAYLGFGTWC
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ANLKRYNDGLFKLDLWIRRLLTIGESNELYTALCDGVCDIVGAGTAVFTTIDMQAGTLT
CCCCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEE
YMAASGGWNAMVKGLAVPMKSGNLCASVAACGTPLRIDQISSRTDSCELLQVMDMDAAVL
EEEECCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHCCCHHHH
VPVLEEGRVTACLSAFRVGNPFDQIDEQLLQQYAHTASMVLRTVRLMVDLRHHAAMLEEE
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDERTRAEQKLAETNVFLNSVVDGVAEPMVVVGLDRRVIMTNRAARDFFQISDVGSDEAC
CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEECCHHHHHHHHHHCCCCHHHH
HRLIHHRDTPCVREEGMQCPLLDVRTAKRPVIATQEHRDRSGDKRVVEVMTSPLLGSDGV
HHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCEECHHHCCCCCHHHHHHHHHCCCCCCCCC
AIGIIEAFRDITDRRQAEETIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRNKRLLSVL
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FLDLDRFKLINDTLGHAVGDKLLMQVAKRLKGVCRRDGDTVARQGGDEFIINLSVISDVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEHHHHHHHH
DALKVAQKIIDSLRTPFVIDGHELFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQG
HHHHHHHHHHHHHCCCEEECCCEEEEEEECCEEEEECCCCCCHHHHCCCCHHHHCCHHCC
RNNCQLYTPEMNSKAFERLSLENNLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQH
CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC
PTMGLVPPARFIPLAEETGLIVPLGEWVLRTACRQNREWQKAGYPPMQVAVNISPRQLQQ
CCCCCCCCHHHCCCCCCCCEEEEHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCHHHHCC
GNLVDVVERALSDSGLAPRWLVLEVTESIMMDGTESTLATFRVLERMGIHIAIDDFGTGY
CCHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCH
SSLHYLKKFPIHALKIDRSFIRDITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLE
HHHHHHHHCCCHHEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
VLRALQCTHMQGHLFSRPAPAEQFAPVFGRAAGAYLGFGTWC
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]