| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is pilQ [H]
Identifier: 39997126
GI number: 39997126
Start: 2219965
End: 2222649
Strand: Reverse
Name: pilQ [H]
Synonym: GSU2028
Alternate gene names: 39997126
Gene position: 2222649-2219965 (Counterclockwise)
Preceding gene: 39997127
Following gene: 39997125
Centisome position: 58.27
GC content: 59.14
Gene sequence:
>2685_bases ATGAGAATCCAGACGACATTCTCCCGGAAACTCGTCCTGATGTCACTGCTGGCTGTGTTCTGCGGATGCGCCGACGTTCA CTCCAGCGTGAAGGGCGACGCCATGGTCGAGCAGGCCAAGGGGGGCGTCCTGCGTGAGATCAAGGTGGCGGAAACAGGTG AGGGTGCCCGTGTCGTACTGTCGGCCGACCGTCCCCTGGCCTACACGTTCTACAAAACGGCAGATCCGCCCAAGGCGGTC ATCGATCTGGCCCGCACCGAACCGGGCGCCATTGCGTCGCCGATGGACGTGAACTCCGATACCATCCGGCGTATCGAGAC CGTGCGGTACGGTGAGGGTGCCACGGCCATGACCCGTGTGGAGGTATATTTCACACGCGACACCGAGGCGAATGCGACCA TCGACGCCAGTGACAAAGGAATGCTTGTCCTTGCCGTGGCTCGTCCTGTCGCGCCCGCCGCCTCCGTTGCCGTTGAAGCC GCACCGGCTGCCGGCCAGGCCGGCGAGAGCTCTACGGGTGCCCCGGTAGCAGTCGCTGCAGCCCCGGCAGTAGCTCCGGC TCCCGTTGCCGTGGAGCCTCAGGCTCCGATCGCTCCGGTTGTTGCTCCGCAGACCGGCCCCCCGGTCATCAAGGCCATCG AAGCGCAGAATGGTTACCTGGTGATCGAAACGAGCGGGGAGATCAAGGACTTCAAGTTCTTCCGCCTTGCCAAGCCCGAC CGGCTGGTGGTGGATATCTCGGACGCCAGGCTCGGCATCAATTCCAAGGCTATTCCCCTGAATGCCCTCGGTGTAGGGAT GGCCCGCATTGGTGCTTATCCCGATAAGGTCAGGATTGTTCTCGATGCTGCGGGGGGGACCCTCTCTCCTCTCAATGTAA CTAAAGGTGCAGCTGGCCTGATTGTTGCCCCGGCTGACAAGGTTGTTGACGTACCTCGTGCTGCCGCCCCTCCGCAGCCG TCCGCCTCGGCATCCCAGGCACGGCAGCCGGAAGCGGTGAAGTCCGCCGAGCCGGCAAAGGGCTTAACACCCGCGGTTGA TGCCATTGAGTTCAAAGTACTTGACGGGACCTCACGTATCACTGTTGCCGTCACCGGCGCCTGTGCCAACGACAAACCGG TCAAATCCGCCGACGGCTTCAGCGTAACGCTTAGAAACTGCATCCTTCCCAAGAAGCTTCAGCGTCATCTCGATACGGGC GCTTTTGCCAGTGTCGTTCAGAAGGTTACCCCCTACCAGGTGAAGACGAAGGGGCGCAGTGACGTAAAGATCCAAGTGCA ACTCCGCCAGCCCGCATCCTACGATGTCAGGCGGGATGGGGACCTGCTGCAGGTGAGCGTCCGGAACCCAGAAGGTTTTG AGCCCCCGGTCGCGGATGTGCCTGCCTCCCCCACGCTTCAGGATGGCATGGATCAGGCCGCTGTCCGGCAGAAGGAACCC TCCAGGGAGACCGACCCGCTTGCCGGTGTCGCCCAGTCGGGTGGAACGAAGAAGGCGTATACCGGGCGCCGCGTGACGCT TGAATTTTCCGATGCCGACATCCGCAAGATATTCCAGCTGATTGCGGAGGTCAGCAATCTCAACTTCCTCGTGGGCGACG ACGTTACCGGCACCATCAGCCTTAAACTGGTCAACGTTCCCTGGGACCAGGCCCTTGATGTCATTCTGGAGAACAAGGGG CTGGGGATGCAGCGGGACGGCAATATCGTACAGATTCGTCCCAAATCCAAGATCCAGACCCTGGCTGACGAGGAGCAGGC GCTCAAGCGGGCCAAGGAACGGGGCATGGAGCTGAAGACAGAGGTCTTTGACATCAACTTTGCGGCGGTGGGGGATATCG TGTCCCAGTTCAACGCCGTCAAGAGCGAGCGGGGGACCATCAGCCAGGATGCGCGGACCAACCGGGTAATCGTGAAGGAT ATCGAGCCGGCCCTGGCTGAAATGCGCATCCTGCTCAAGAACCTTGATCTGCCTGAAAAGCAGGTGCTCATCGAAGCGCG CATTGTGGAAGCAACCTCCACCTTCACTCGTGATCTAGGGGTCCAGTGGGGCATACACAGCAACGATTCCGGCGCTGATA TTATCAGAAGCGTTGATGCCGGATTCGGCGGGATCGTAACGCCGCCGCCGGCCAGCGGCTTCCCTGCGGCAACATCATCC GGCGGTGCTGTTGGGATCAGCTTTGCCAAAATGGGGAGCTTGCAGGTTGATCTGCGGTTGTCGGCAGCAGCCGTTGCAGG CCTTGTTAAGATCGTCTCGACGCCCAAGGTTGTTACGCTTAACAACAAAGCGGCGAAAATTTCGCAAGGTCAGTCGATAC CGTATCAAACCACATCAGCCGAAGGAACCAAAACCGAGTTCGTGGAGGCGGCGCTGACACTCGAAGTAACGCCTCACATA ACAGCGGACGGCAGCGTTTCCATGAAGATTAAGGCCTCAAACAACTCAGCTGGCACCGGGTCTCCGCCTCCGATTAACAA GAAGGAGGCAACCACCGAACTGTTGGTCAAGAACGGTGAAACCACCGTAATTGGCGGTATCTATGTAGACAGCGATACTG ATGAAGACAGAGGGGTACCATTCCTGATGGATATTCCGGTCCTTGGCTGGCTATTCAAGTCGAACACGAAGAACAAGACA AAAACGGAATTACTCATTTTCATAACGCCAAAAATTGTGAGCTGA
Upstream 100 bases:
>100_bases TCGTATCTGGAAGTGAACGAGCGATATACCGATGACTTCGGCAAGGTGAGAAAGCGGACGGTCAAGCTTTCTCTGGCGAA GAAACAGTAAGGAGTCCCCC
Downstream 100 bases:
>100_bases TACAACAAGATACAATATATACTACTTAACAAAAGCCAGGGTAATCCTGGCTTTTGCGTGACAACGAGGAGACCATGCTA CGCTACCTGACCGCCGGTGA
Product: type IV pilus biogenesis protein PilQ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 894; Mature: 894
Protein sequence:
>894_residues MRIQTTFSRKLVLMSLLAVFCGCADVHSSVKGDAMVEQAKGGVLREIKVAETGEGARVVLSADRPLAYTFYKTADPPKAV IDLARTEPGAIASPMDVNSDTIRRIETVRYGEGATAMTRVEVYFTRDTEANATIDASDKGMLVLAVARPVAPAASVAVEA APAAGQAGESSTGAPVAVAAAPAVAPAPVAVEPQAPIAPVVAPQTGPPVIKAIEAQNGYLVIETSGEIKDFKFFRLAKPD RLVVDISDARLGINSKAIPLNALGVGMARIGAYPDKVRIVLDAAGGTLSPLNVTKGAAGLIVAPADKVVDVPRAAAPPQP SASASQARQPEAVKSAEPAKGLTPAVDAIEFKVLDGTSRITVAVTGACANDKPVKSADGFSVTLRNCILPKKLQRHLDTG AFASVVQKVTPYQVKTKGRSDVKIQVQLRQPASYDVRRDGDLLQVSVRNPEGFEPPVADVPASPTLQDGMDQAAVRQKEP SRETDPLAGVAQSGGTKKAYTGRRVTLEFSDADIRKIFQLIAEVSNLNFLVGDDVTGTISLKLVNVPWDQALDVILENKG LGMQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKTEVFDINFAAVGDIVSQFNAVKSERGTISQDARTNRVIVKD IEPALAEMRILLKNLDLPEKQVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSAEGTKTEFVEAALTLEVTPHI TADGSVSMKIKASNNSAGTGSPPPINKKEATTELLVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKT KTELLIFITPKIVS
Sequences:
>Translated_894_residues MRIQTTFSRKLVLMSLLAVFCGCADVHSSVKGDAMVEQAKGGVLREIKVAETGEGARVVLSADRPLAYTFYKTADPPKAV IDLARTEPGAIASPMDVNSDTIRRIETVRYGEGATAMTRVEVYFTRDTEANATIDASDKGMLVLAVARPVAPAASVAVEA APAAGQAGESSTGAPVAVAAAPAVAPAPVAVEPQAPIAPVVAPQTGPPVIKAIEAQNGYLVIETSGEIKDFKFFRLAKPD RLVVDISDARLGINSKAIPLNALGVGMARIGAYPDKVRIVLDAAGGTLSPLNVTKGAAGLIVAPADKVVDVPRAAAPPQP SASASQARQPEAVKSAEPAKGLTPAVDAIEFKVLDGTSRITVAVTGACANDKPVKSADGFSVTLRNCILPKKLQRHLDTG AFASVVQKVTPYQVKTKGRSDVKIQVQLRQPASYDVRRDGDLLQVSVRNPEGFEPPVADVPASPTLQDGMDQAAVRQKEP SRETDPLAGVAQSGGTKKAYTGRRVTLEFSDADIRKIFQLIAEVSNLNFLVGDDVTGTISLKLVNVPWDQALDVILENKG LGMQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKTEVFDINFAAVGDIVSQFNAVKSERGTISQDARTNRVIVKD IEPALAEMRILLKNLDLPEKQVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSAEGTKTEFVEAALTLEVTPHI TADGSVSMKIKASNNSAGTGSPPPINKKEATTELLVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKT KTELLIFITPKIVS >Mature_894_residues MRIQTTFSRKLVLMSLLAVFCGCADVHSSVKGDAMVEQAKGGVLREIKVAETGEGARVVLSADRPLAYTFYKTADPPKAV IDLARTEPGAIASPMDVNSDTIRRIETVRYGEGATAMTRVEVYFTRDTEANATIDASDKGMLVLAVARPVAPAASVAVEA APAAGQAGESSTGAPVAVAAAPAVAPAPVAVEPQAPIAPVVAPQTGPPVIKAIEAQNGYLVIETSGEIKDFKFFRLAKPD RLVVDISDARLGINSKAIPLNALGVGMARIGAYPDKVRIVLDAAGGTLSPLNVTKGAAGLIVAPADKVVDVPRAAAPPQP SASASQARQPEAVKSAEPAKGLTPAVDAIEFKVLDGTSRITVAVTGACANDKPVKSADGFSVTLRNCILPKKLQRHLDTG AFASVVQKVTPYQVKTKGRSDVKIQVQLRQPASYDVRRDGDLLQVSVRNPEGFEPPVADVPASPTLQDGMDQAAVRQKEP SRETDPLAGVAQSGGTKKAYTGRRVTLEFSDADIRKIFQLIAEVSNLNFLVGDDVTGTISLKLVNVPWDQALDVILENKG LGMQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKTEVFDINFAAVGDIVSQFNAVKSERGTISQDARTNRVIVKD IEPALAEMRILLKNLDLPEKQVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSAEGTKTEFVEAALTLEVTPHI TADGSVSMKIKASNNSAGTGSPPPINKKEATTELLVKNGETTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKT KTELLIFITPKIVS
Specific function: Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a "porthole" allowing passage of the fimbrae through the outer membrane [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=401, Percent_Identity=32.4189526184539, Blast_Score=208, Evalue=1e-54, Organism=Escherichia coli, GI87082242, Length=340, Percent_Identity=28.8235294117647, Blast_Score=108, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 94223; Mature: 94223
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIQTTFSRKLVLMSLLAVFCGCADVHSSVKGDAMVEQAKGGVLREIKVAETGEGARVVL CCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHCCCEEEEEEEEECCCCCEEEE SADRPLAYTFYKTADPPKAVIDLARTEPGAIASPMDVNSDTIRRIETVRYGEGATAMTRV ECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEEEE EVYFTRDTEANATIDASDKGMLVLAVARPVAPAASVAVEAAPAAGQAGESSTGAPVAVAA EEEEEECCCCCEEEECCCCCEEEEEECCCCCCHHHHEEECCCCCCCCCCCCCCCCEEEEE APAVAPAPVAVEPQAPIAPVVAPQTGPPVIKAIEAQNGYLVIETSGEIKDFKFFRLAKPD CCCCCCCCEEECCCCCCCCEECCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEECCCC RLVVDISDARLGINSKAIPLNALGVGMARIGAYPDKVRIVLDAAGGTLSPLNVTKGAAGL EEEEEECCCEECCCCCCCEEHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCCCCEE IVAPADKVVDVPRAAAPPQPSASASQARQPEAVKSAEPAKGLTPAVDAIEFKVLDGTSRI EECCCHHHHCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEE TVAVTGACANDKPVKSADGFSVTLRNCILPKKLQRHLDTGAFASVVQKVTPYQVKTKGRS EEEEEECCCCCCCCCCCCCCEEEHHHCCCHHHHHHHCCCHHHHHHHHHCCCEEEECCCCC DVKIQVQLRQPASYDVRRDGDLLQVSVRNPEGFEPPVADVPASPTLQDGMDQAAVRQKEP CEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCHHHHHHHCCCC SRETDPLAGVAQSGGTKKAYTGRRVTLEFSDADIRKIFQLIAEVSNLNFLVGDDVTGTIS CCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEECCCCEEEEE LKLVNVPWDQALDVILENKGLGMQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKT EEEEECCHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEE EVFDINFAAVGDIVSQFNAVKSERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLPEK EEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHH QVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS HEEEEEEEEHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSA CCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCEECCCC EGTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSAGTGSPPPINKKEATTELLVKNGE CCCHHHEEEEEEEEEECCCEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCC TTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIVS EEEEEEEEECCCCCCCCCCCEEEECCHHHHHCCCCCCCCCEEEEEEEECCCCCC >Mature Secondary Structure MRIQTTFSRKLVLMSLLAVFCGCADVHSSVKGDAMVEQAKGGVLREIKVAETGEGARVVL CCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHCCCEEEEEEEEECCCCCEEEE SADRPLAYTFYKTADPPKAVIDLARTEPGAIASPMDVNSDTIRRIETVRYGEGATAMTRV ECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEEEE EVYFTRDTEANATIDASDKGMLVLAVARPVAPAASVAVEAAPAAGQAGESSTGAPVAVAA EEEEEECCCCCEEEECCCCCEEEEEECCCCCCHHHHEEECCCCCCCCCCCCCCCCEEEEE APAVAPAPVAVEPQAPIAPVVAPQTGPPVIKAIEAQNGYLVIETSGEIKDFKFFRLAKPD CCCCCCCCEEECCCCCCCCEECCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEECCCC RLVVDISDARLGINSKAIPLNALGVGMARIGAYPDKVRIVLDAAGGTLSPLNVTKGAAGL EEEEEECCCEECCCCCCCEEHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEECCCCCEE IVAPADKVVDVPRAAAPPQPSASASQARQPEAVKSAEPAKGLTPAVDAIEFKVLDGTSRI EECCCHHHHCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEE TVAVTGACANDKPVKSADGFSVTLRNCILPKKLQRHLDTGAFASVVQKVTPYQVKTKGRS EEEEEECCCCCCCCCCCCCCEEEHHHCCCHHHHHHHCCCHHHHHHHHHCCCEEEECCCCC DVKIQVQLRQPASYDVRRDGDLLQVSVRNPEGFEPPVADVPASPTLQDGMDQAAVRQKEP CEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCHHHHHHHCCCC SRETDPLAGVAQSGGTKKAYTGRRVTLEFSDADIRKIFQLIAEVSNLNFLVGDDVTGTIS CCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEECCCCEEEEE LKLVNVPWDQALDVILENKGLGMQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKT EEEEECCHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEE EVFDINFAAVGDIVSQFNAVKSERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLPEK EEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHH QVLIEARIVEATSTFTRDLGVQWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSS HEEEEEEEEHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GGAVGISFAKMGSLQVDLRLSAAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSA CCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCCCEECCCC EGTKTEFVEAALTLEVTPHITADGSVSMKIKASNNSAGTGSPPPINKKEATTELLVKNGE CCCHHHEEEEEEEEEECCCEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCC TTVIGGIYVDSDTDEDRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIVS EEEEEEEEECCCCCCCCCCCEEEECCHHHHHCCCCCCCCCEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7901733; 10984043 [H]