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The map label for this gene is lpsE [H]

Identifier: 39997074

GI number: 39997074

Start: 2166708

End: 2167829

Strand: Reverse

Name: lpsE [H]

Synonym: GSU1976

Alternate gene names: 39997074

Gene position: 2167829-2166708 (Counterclockwise)

Preceding gene: 39997075

Following gene: 39997073

Centisome position: 56.84

GC content: 63.99

Gene sequence:

>1122_bases
ATGAAGGTTTTGCACGTCATCGACAGCGGTGGCCTGTACGGAGCCGAAGTCATGCTCCTCAATCTCGCTGCCGAGCAGGC
CGCCATGGGGCTTGAACCGGTCATCGCCAGCATCGGCGATCCCCTCTGCGGCGAAAAACCGCTGGAAAAGGAGGCAGTAC
GGAGGGGGTTGCGGGTGGAGAGATTTCGCATGAGGCCGGGGGCGAATATTGCCGGCGCCTTCAGCGTGCTTCGTTTCGCG
TGGCGTGAGCAATGCGACGTGCTCCATTCCCACGGCTACAAGGGGAATATCCTGTTCGGCTTCATGCCGCGGGCGCTCCG
CCGGCTGCCAATGGTCACCACTCTTCATGGCTGGACCTGGACTGGCGGGATGGACCGGATGGGCCTCTACGAATGGCTCG
ACCGACTGAGCCTGCGCTTTGTGGATGCGGTGGTGATGGTGAACGACGCCATGCGCCGGAAGATCGACCTTCCCGGCATT
CACGTGGTGCCTAACGGCATCCCGCTCGCCGGAGAGGCCGAGCGGCCCGCGGTGCCCCTCGACCCCCGGATCGTAGAGTT
CTGCCGGGGAGGCATCACCCTGGGCGCAATAGGCCGTCTGTCCCCGGAAAAGGGGTTCGATATCCTGCTGGACGCGGTCA
GGGAGGTGGCGGAGACGAATCCCGGAGTCCGGCTGGCACTCCTCGGGGAGGGAGTCGAGCGAGACGCCCTGGAGGCGAAG
ATCCGGGAACTGGGGCTGACGGAAAGGGTGCTGCTGCCGGGATATGTGCCGGACGCCAATCGCTACCTGCCCCTGTTCCG
GGCGTTTGTGCTCTCGTCGCTGACCGAAGGGCTTCCCATGGTCATACTTGAAGCAATGCTGGCCGGGGTCCCGATTGTCG
CCACAAGGGTAGGGGGCGTGCCCGAAGTGCTGGATGGCGGTGCAGCCGGTCTTCTGGCTGAACCGCGCCATGCTGGCAGC
CTTGCAGGGTGCGTGTCGCGCCTGATCGGAGACGACCTACTGGCCGCGCGTCTCGCGGAGCGGGGAAGACACTTGGTCGA
AACACGCTACGCAGCCGGCGCGATGGCCATCAAATACAGCGAAATCTATGACGGTGTTCATCCCGCCATACATCGAAAGT
GA

Upstream 100 bases:

>100_bases
GCCCGCTACTTTTTCCTGCTGAACCTTGCCGCCGCCCACGCCTTCGGCAAGTTCCTCAGGGGGGAGAAACAGGTCATCTG
GACGCCGCGGAAGGGGTAGC

Downstream 100 bases:

>100_bases
GCATTAATGGATCTCAAAGGCAAAAAGATACTTGTAACCGGCGCCGATGGCTTCATCGGTTCACATCTCACCGAAGCACT
CCTGATGCGGGGGTACGATA

Product: glycosyl transferase, group 1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKVLHVIDSGGLYGAEVMLLNLAAEQAAMGLEPVIASIGDPLCGEKPLEKEAVRRGLRVERFRMRPGANIAGAFSVLRFA
WREQCDVLHSHGYKGNILFGFMPRALRRLPMVTTLHGWTWTGGMDRMGLYEWLDRLSLRFVDAVVMVNDAMRRKIDLPGI
HVVPNGIPLAGEAERPAVPLDPRIVEFCRGGITLGAIGRLSPEKGFDILLDAVREVAETNPGVRLALLGEGVERDALEAK
IRELGLTERVLLPGYVPDANRYLPLFRAFVLSSLTEGLPMVILEAMLAGVPIVATRVGGVPEVLDGGAAGLLAEPRHAGS
LAGCVSRLIGDDLLAARLAERGRHLVETRYAAGAMAIKYSEIYDGVHPAIHRK

Sequences:

>Translated_373_residues
MKVLHVIDSGGLYGAEVMLLNLAAEQAAMGLEPVIASIGDPLCGEKPLEKEAVRRGLRVERFRMRPGANIAGAFSVLRFA
WREQCDVLHSHGYKGNILFGFMPRALRRLPMVTTLHGWTWTGGMDRMGLYEWLDRLSLRFVDAVVMVNDAMRRKIDLPGI
HVVPNGIPLAGEAERPAVPLDPRIVEFCRGGITLGAIGRLSPEKGFDILLDAVREVAETNPGVRLALLGEGVERDALEAK
IRELGLTERVLLPGYVPDANRYLPLFRAFVLSSLTEGLPMVILEAMLAGVPIVATRVGGVPEVLDGGAAGLLAEPRHAGS
LAGCVSRLIGDDLLAARLAERGRHLVETRYAAGAMAIKYSEIYDGVHPAIHRK
>Mature_373_residues
MKVLHVIDSGGLYGAEVMLLNLAAEQAAMGLEPVIASIGDPLCGEKPLEKEAVRRGLRVERFRMRPGANIAGAFSVLRFA
WREQCDVLHSHGYKGNILFGFMPRALRRLPMVTTLHGWTWTGGMDRMGLYEWLDRLSLRFVDAVVMVNDAMRRKIDLPGI
HVVPNGIPLAGEAERPAVPLDPRIVEFCRGGITLGAIGRLSPEKGFDILLDAVREVAETNPGVRLALLGEGVERDALEAK
IRELGLTERVLLPGYVPDANRYLPLFRAFVLSSLTEGLPMVILEAMLAGVPIVATRVGGVPEVLDGGAAGLLAEPRHAGS
LAGCVSRLIGDDLLAARLAERGRHLVETRYAAGAMAIKYSEIYDGVHPAIHRK

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Homo sapiens, GI11863130, Length=314, Percent_Identity=24.203821656051, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI1788357, Length=182, Percent_Identity=28.021978021978, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17532709, Length=257, Percent_Identity=30.3501945525292, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI9755344, Length=318, Percent_Identity=25.4716981132075, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24654571, Length=248, Percent_Identity=28.6290322580645, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40506; Mature: 40506

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLHVIDSGGLYGAEVMLLNLAAEQAAMGLEPVIASIGDPLCGEKPLEKEAVRRGLRVE
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCHHH
RFRMRPGANIAGAFSVLRFAWREQCDVLHSHGYKGNILFGFMPRALRRLPMVTTLHGWTW
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCEEECCEEE
TGGMDRMGLYEWLDRLSLRFVDAVVMVNDAMRRKIDLPGIHVVPNGIPLAGEAERPAVPL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
DPRIVEFCRGGITLGAIGRLSPEKGFDILLDAVREVAETNPGVRLALLGEGVERDALEAK
CHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
IRELGLTERVLLPGYVPDANRYLPLFRAFVLSSLTEGLPMVILEAMLAGVPIVATRVGGV
HHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHCCCC
PEVLDGGAAGLLAEPRHAGSLAGCVSRLIGDDLLAARLAERGRHLVETRYAAGAMAIKYS
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEEEHH
EIYDGVHPAIHRK
HHHCCCCHHHCCC
>Mature Secondary Structure
MKVLHVIDSGGLYGAEVMLLNLAAEQAAMGLEPVIASIGDPLCGEKPLEKEAVRRGLRVE
CCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCHHH
RFRMRPGANIAGAFSVLRFAWREQCDVLHSHGYKGNILFGFMPRALRRLPMVTTLHGWTW
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHCCCCEEECCEEE
TGGMDRMGLYEWLDRLSLRFVDAVVMVNDAMRRKIDLPGIHVVPNGIPLAGEAERPAVPL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
DPRIVEFCRGGITLGAIGRLSPEKGFDILLDAVREVAETNPGVRLALLGEGVERDALEAK
CHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
IRELGLTERVLLPGYVPDANRYLPLFRAFVLSSLTEGLPMVILEAMLAGVPIVATRVGGV
HHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHCCCC
PEVLDGGAAGLLAEPRHAGSLAGCVSRLIGDDLLAARLAERGRHLVETRYAAGAMAIKYS
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEEEHH
EIYDGVHPAIHRK
HHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]