| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is glnD [H]
Identifier: 39996919
GI number: 39996919
Start: 1985796
End: 1988504
Strand: Reverse
Name: glnD [H]
Synonym: GSU1820
Alternate gene names: 39996919
Gene position: 1988504-1985796 (Counterclockwise)
Preceding gene: 39996920
Following gene: 39996918
Centisome position: 52.14
GC content: 57.29
Gene sequence:
>2709_bases ATGCAATTCGACATCGACCGATACTTTCCCGACACCTCCCAGGAGAGCGGTGACTCCGGCCGGGCATCCTTTGAGGAAAA GCGCCCGCTCTACCTTGCCGCCAGCAAGCATTTCCTCACTCATTACCGCGAGGAGATCAAATCCGTCCACCGCGGCGGGG CGGCCGGCACCACGGTAGTGAAGCATATCACCGCCATGACCGATACCCTCATCCGCAAGCTTTTCCGGAGCATCACGCGG GACGTGGCCCAGCCGGGGAGGGGCCGCGAGCACCTGACGCTCATGGCCATCGGCGGCTATGGGCGAGGCGAACTGAACCC CCATTCGGACATTGACCTGATGTTCCTCTATGGCGGCAAGGATGCCGCGAGGGTAGAGGATATTGCCCAGAAGCTCCTCT ATTTCCTGTGGGACATGCGCCTGGATGTTGGGTATTCCGTCCGCACGCTGCAGGATTGCGTGGAGATGGCCAGTTCGGAT CTGACAGTACGAACCGCACTTCTGGACTCGCGGGTGCTGGCGGGCAGCCGGGTCTTTTTCCGCGAGTTCGAGAAGGTGAT GCTGACCCAGATCCTGGCAAAGAAGAGTGATTCGTTCATCCGGGACAAAGTGGCGGAACTGCGCAAGCGAAGGGAGAAAT ACGGCTCATCGGTCTATCTTCTGGAACCCAACGTGAAGGAGAGCGAAGGGGGGCTGCGGGATCTTCATACAGCTCTCTGG GTCATGAAGATCAAGTATAAGGTGAAGGATCCCAAGGAATTGGTGGTGAAGGGGATTCTGTCCGAGGAGGAGCTTGCCTC CTATCACGAGGCTCTCTCCTATCTTTGGCGCGTCAGGAACGAACTCCACTTCCTCGCCGGCCGCAAGAACGATCAGCTCA CCTTTGAGGCCCAGACGGAACTCGCGTCGTTTTTCGGCTACGAGGATTCGGCGCGGACTCTTGCCGTTGAAGAGTTCATG CGGGACTACTACCTGCACGCCAACCGGGTTGAACACTTGGCCTCATCGCTCATTGCCCGCTGCATGAGGAAGGAAGAAGG GGCCTTCAAGATCCTGGGGTACTTTATTCGCCGTCCCATCGGTGAGGGGTTTTACATCCTCAAGGGAGAGCTTGTCATCC CTGATGAATCGGTAATCGAGAAAGAGCCGGCCCGGCTCATGAAGATTTTCGAGTATGCCCAGAAGCACGGCGTGGAGATC AGCGTTGCCGTAAAGTCGCTGATCCGGAAGAATCTCCACCTGGTCAACGACAAGTTCCGACGTAGCCGAGAGGTGAACCA GTCGTTCTTTGCCATCCTCCGCAGCGATAAGGGGGTGCCCGAAACGCTCCGCCTGATGCATCATCTGGAATTCCTGAACC ATTTCATTCCCGAATTCGGCCACATTTACTGCAAGGTCCAGCATGATCTCTACCATATCTACACGGTTGACATCCATTCG CTCTTTGCCGTGGAGGAGATCGTCAAGCTGCTCCGGGGAGAGCACGAAAAGGAACTGCCGCTGCTTACCTCGCTGGCACG TCAGGTAGACAAGCGGGAGCTGCTCCTGCTCGCGGTCCTGTTCCACGACATCGGCAAGGGCGAGGGGGGCGGACACGCGG AAAAAGGCGCGGCCATGATGCCCACTATTGCCCGGCGCATGGGGCTCTCCAAGGAGGATAGCGAGCGGTTGGAGTTTCTC GTGCGGCAGCATCTGCTCTTTGCTCACATTGCCCAGCGTCGCGACCTCCACGACGAGAAGATGATCGTGCAGTTCGCTCG CCAAATGGAAAAGAGCGAAAACCTGAAGATGCTCTACCTGTTGACTTATGCCGACATCAGGGCGGTGGGCACGGATGTCT GGACGGAATGGAAGGCGAGACTCCTTCAGGAATTGTACGAGAAAGCCTTTAACGTTCTCGAACGGGGCGATTTCCGGCTC GAAGCGCACAGTGAGCGGGTCAAGAAGGTCAAGCGGAAGGTTGTCGAGCTTCTGGGCGACGAGTATCCCGCCGCAGCGGT CAGGGAAGAGCTTCGCGCCATGACTATCCGACATCTTTTGTCCAACCCCGCGGCTGTCATTGCCGAGCACGTGAAGATTC TCCATGCCCTCGAACCGGGCGGTGTCCTCACGCATGTAACGCACGTGCAGGAAGGCGGCTACTCTACCTATTCCATCTGC ACCTGGGATATCCCCGGCCTGTTTTCCATGATCACCGGGGTCATGGCCGCCAACGGCATCAATATTCTCGGTGCCCAGAT ACACACCAGCTCCAATGGTAAAGTCCTCGATATCCTTCAGGTTAATTCGCCGCAAGGATTCATGATAATCGAGGAAAGCC GCTGGAGCCGGGTCGACGAAGACCTGCGCCAGGTGCTGACCGGAAAAATTCGGGTGGCTTCCCTCGTGGCTAAGCGCCAG AGGCCGACGCTTTTGACGGAGCGGCCCAAACCCCGCTTTCCCTCGCGGGTTGATATCGACAATGAGGTGTCGTCGGACTA TACCGTCATCGATATCTATACCCACGACAAGGTCGGATTGCTCTACCGGATAACAAGCACGCTCACGGATCTGGGGCTCT ACATCGGAATTGCCAAGATTTCTACCAAAGTTGACCAGGTGGCGGACGTCTTTTACGTGAAGGATATCTTTGGCCACAAG ATCACCAGTGTCGAGCGGCTGGAGGAGATCCGGGAAAAGCTCCGTGTCGCGGTTGAACAGCCGGAATGA
Upstream 100 bases:
>100_bases GGAGCAAGCCGCCGAGGGCATCCTGGAGGGAGTCAAGGGGTACATCTCCAGCCTCAAGTAAACGGCAGTCGGAACTCGCA CCCTAAGACATCGAGGTGAT
Downstream 100 bases:
>100_bases ATCAGCATCTGGATCTTTTTCTCGGCTATCTGGTGGTCGAGAAGGGGCTTGCCCGCAATTCGGTGGAGTCCTATGCCAGG GACCTGAGCCGTTATCTGGG
Product: protein-P-II uridylyltransferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 902; Mature: 902
Protein sequence:
>902_residues MQFDIDRYFPDTSQESGDSGRASFEEKRPLYLAASKHFLTHYREEIKSVHRGGAAGTTVVKHITAMTDTLIRKLFRSITR DVAQPGRGREHLTLMAIGGYGRGELNPHSDIDLMFLYGGKDAARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMASSD LTVRTALLDSRVLAGSRVFFREFEKVMLTQILAKKSDSFIRDKVAELRKRREKYGSSVYLLEPNVKESEGGLRDLHTALW VMKIKYKVKDPKELVVKGILSEEELASYHEALSYLWRVRNELHFLAGRKNDQLTFEAQTELASFFGYEDSARTLAVEEFM RDYYLHANRVEHLASSLIARCMRKEEGAFKILGYFIRRPIGEGFYILKGELVIPDESVIEKEPARLMKIFEYAQKHGVEI SVAVKSLIRKNLHLVNDKFRRSREVNQSFFAILRSDKGVPETLRLMHHLEFLNHFIPEFGHIYCKVQHDLYHIYTVDIHS LFAVEEIVKLLRGEHEKELPLLTSLARQVDKRELLLLAVLFHDIGKGEGGGHAEKGAAMMPTIARRMGLSKEDSERLEFL VRQHLLFAHIAQRRDLHDEKMIVQFARQMEKSENLKMLYLLTYADIRAVGTDVWTEWKARLLQELYEKAFNVLERGDFRL EAHSERVKKVKRKVVELLGDEYPAAAVREELRAMTIRHLLSNPAAVIAEHVKILHALEPGGVLTHVTHVQEGGYSTYSIC TWDIPGLFSMITGVMAANGINILGAQIHTSSNGKVLDILQVNSPQGFMIIEESRWSRVDEDLRQVLTGKIRVASLVAKRQ RPTLLTERPKPRFPSRVDIDNEVSSDYTVIDIYTHDKVGLLYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKDIFGHK ITSVERLEEIREKLRVAVEQPE
Sequences:
>Translated_902_residues MQFDIDRYFPDTSQESGDSGRASFEEKRPLYLAASKHFLTHYREEIKSVHRGGAAGTTVVKHITAMTDTLIRKLFRSITR DVAQPGRGREHLTLMAIGGYGRGELNPHSDIDLMFLYGGKDAARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMASSD LTVRTALLDSRVLAGSRVFFREFEKVMLTQILAKKSDSFIRDKVAELRKRREKYGSSVYLLEPNVKESEGGLRDLHTALW VMKIKYKVKDPKELVVKGILSEEELASYHEALSYLWRVRNELHFLAGRKNDQLTFEAQTELASFFGYEDSARTLAVEEFM RDYYLHANRVEHLASSLIARCMRKEEGAFKILGYFIRRPIGEGFYILKGELVIPDESVIEKEPARLMKIFEYAQKHGVEI SVAVKSLIRKNLHLVNDKFRRSREVNQSFFAILRSDKGVPETLRLMHHLEFLNHFIPEFGHIYCKVQHDLYHIYTVDIHS LFAVEEIVKLLRGEHEKELPLLTSLARQVDKRELLLLAVLFHDIGKGEGGGHAEKGAAMMPTIARRMGLSKEDSERLEFL VRQHLLFAHIAQRRDLHDEKMIVQFARQMEKSENLKMLYLLTYADIRAVGTDVWTEWKARLLQELYEKAFNVLERGDFRL EAHSERVKKVKRKVVELLGDEYPAAAVREELRAMTIRHLLSNPAAVIAEHVKILHALEPGGVLTHVTHVQEGGYSTYSIC TWDIPGLFSMITGVMAANGINILGAQIHTSSNGKVLDILQVNSPQGFMIIEESRWSRVDEDLRQVLTGKIRVASLVAKRQ RPTLLTERPKPRFPSRVDIDNEVSSDYTVIDIYTHDKVGLLYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKDIFGHK ITSVERLEEIREKLRVAVEQPE >Mature_902_residues MQFDIDRYFPDTSQESGDSGRASFEEKRPLYLAASKHFLTHYREEIKSVHRGGAAGTTVVKHITAMTDTLIRKLFRSITR DVAQPGRGREHLTLMAIGGYGRGELNPHSDIDLMFLYGGKDAARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMASSD LTVRTALLDSRVLAGSRVFFREFEKVMLTQILAKKSDSFIRDKVAELRKRREKYGSSVYLLEPNVKESEGGLRDLHTALW VMKIKYKVKDPKELVVKGILSEEELASYHEALSYLWRVRNELHFLAGRKNDQLTFEAQTELASFFGYEDSARTLAVEEFM RDYYLHANRVEHLASSLIARCMRKEEGAFKILGYFIRRPIGEGFYILKGELVIPDESVIEKEPARLMKIFEYAQKHGVEI SVAVKSLIRKNLHLVNDKFRRSREVNQSFFAILRSDKGVPETLRLMHHLEFLNHFIPEFGHIYCKVQHDLYHIYTVDIHS LFAVEEIVKLLRGEHEKELPLLTSLARQVDKRELLLLAVLFHDIGKGEGGGHAEKGAAMMPTIARRMGLSKEDSERLEFL VRQHLLFAHIAQRRDLHDEKMIVQFARQMEKSENLKMLYLLTYADIRAVGTDVWTEWKARLLQELYEKAFNVLERGDFRL EAHSERVKKVKRKVVELLGDEYPAAAVREELRAMTIRHLLSNPAAVIAEHVKILHALEPGGVLTHVTHVQEGGYSTYSIC TWDIPGLFSMITGVMAANGINILGAQIHTSSNGKVLDILQVNSPQGFMIIEESRWSRVDEDLRQVLTGKIRVASLVAKRQ RPTLLTERPKPRFPSRVDIDNEVSSDYTVIDIYTHDKVGLLYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKDIFGHK ITSVERLEEIREKLRVAVEQPE
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=839, Percent_Identity=31.4660309892729, Blast_Score=352, Evalue=7e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 103454; Mature: 103454
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFDIDRYFPDTSQESGDSGRASFEEKRPLYLAASKHFLTHYREEIKSVHRGGAAGTTVV CCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHH KHITAMTDTLIRKLFRSITRDVAQPGRGREHLTLMAIGGYGRGELNPHSDIDLMFLYGGK HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCC DAARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMASSDLTVRTALLDSRVLAGSRVFF CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHHH REFEKVMLTQILAKKSDSFIRDKVAELRKRREKYGSSVYLLEPNVKESEGGLRDLHTALW HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHH VMKIKYKVKDPKELVVKGILSEEELASYHEALSYLWRVRNELHFLAGRKNDQLTFEAQTE HHHHEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH LASFFGYEDSARTLAVEEFMRDYYLHANRVEHLASSLIARCMRKEEGAFKILGYFIRRPI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC GEGFYILKGELVIPDESVIEKEPARLMKIFEYAQKHGVEISVAVKSLIRKNLHLVNDKFR CCCEEEEECCEECCCHHHHHCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHH RSREVNQSFFAILRSDKGVPETLRLMHHLEFLNHFIPEFGHIYCKVQHDLYHIYTVDIHS HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHCEEEEEEEECEEEEEEEHHHH LFAVEEIVKLLRGEHEKELPLLTSLARQVDKRELLLLAVLFHDIGKGEGGGHAEKGAAMM HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH PTIARRMGLSKEDSERLEFLVRQHLLFAHIAQRRDLHDEKMIVQFARQMEKSENLKMLYL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEE LTYADIRAVGTDVWTEWKARLLQELYEKAFNVLERGDFRLEAHSERVKKVKRKVVELLGD EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCC EYPAAAVREELRAMTIRHLLSNPAAVIAEHVKILHALEPGGVLTHVTHVQEGGYSTYSIC CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEE TWDIPGLFSMITGVMAANGINILGAQIHTSSNGKVLDILQVNSPQGFMIIEESRWSRVDE EECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEECCHHHHHHH DLRQVLTGKIRVASLVAKRQRPTLLTERPKPRFPSRVDIDNEVSSDYTVIDIYTHDKVGL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH LYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKDIFGHKITSVERLEEIREKLRVAVEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC PE CC >Mature Secondary Structure MQFDIDRYFPDTSQESGDSGRASFEEKRPLYLAASKHFLTHYREEIKSVHRGGAAGTTVV CCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHH KHITAMTDTLIRKLFRSITRDVAQPGRGREHLTLMAIGGYGRGELNPHSDIDLMFLYGGK HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCC DAARVEDIAQKLLYFLWDMRLDVGYSVRTLQDCVEMASSDLTVRTALLDSRVLAGSRVFF CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHHH REFEKVMLTQILAKKSDSFIRDKVAELRKRREKYGSSVYLLEPNVKESEGGLRDLHTALW HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHH VMKIKYKVKDPKELVVKGILSEEELASYHEALSYLWRVRNELHFLAGRKNDQLTFEAQTE HHHHEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH LASFFGYEDSARTLAVEEFMRDYYLHANRVEHLASSLIARCMRKEEGAFKILGYFIRRPI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC GEGFYILKGELVIPDESVIEKEPARLMKIFEYAQKHGVEISVAVKSLIRKNLHLVNDKFR CCCEEEEECCEECCCHHHHHCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHH RSREVNQSFFAILRSDKGVPETLRLMHHLEFLNHFIPEFGHIYCKVQHDLYHIYTVDIHS HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHCEEEEEEEECEEEEEEEHHHH LFAVEEIVKLLRGEHEKELPLLTSLARQVDKRELLLLAVLFHDIGKGEGGGHAEKGAAMM HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH PTIARRMGLSKEDSERLEFLVRQHLLFAHIAQRRDLHDEKMIVQFARQMEKSENLKMLYL HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEE LTYADIRAVGTDVWTEWKARLLQELYEKAFNVLERGDFRLEAHSERVKKVKRKVVELLGD EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCC EYPAAAVREELRAMTIRHLLSNPAAVIAEHVKILHALEPGGVLTHVTHVQEGGYSTYSIC CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEE TWDIPGLFSMITGVMAANGINILGAQIHTSSNGKVLDILQVNSPQGFMIIEESRWSRVDE EECCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEECCHHHHHHH DLRQVLTGKIRVASLVAKRQRPTLLTERPKPRFPSRVDIDNEVSSDYTVIDIYTHDKVGL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHH LYRITSTLTDLGLYIGIAKISTKVDQVADVFYVKDIFGHKITSVERLEEIREKLRVAVEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC PE CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA