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The map label for this gene is tapC [H]

Identifier: 39996883

GI number: 39996883

Start: 1947687

End: 1948895

Strand: Reverse

Name: tapC [H]

Synonym: GSU1784

Alternate gene names: 39996883

Gene position: 1948895-1947687 (Counterclockwise)

Preceding gene: 39996884

Following gene: 39996882

Centisome position: 51.1

GC content: 54.43

Gene sequence:

>1209_bases
ATGGCCCTATACCACTGTAAGCTCGGCTCCTCGGAGGGGCGAATCATCACCAGGGAACTGGAAGCAGCAAACCCTGAAAT
GCTTCGCACCAGTTTGGAAGAGCAGGGTTTTTTTGTTTTCGAGATAAAAAAAAAGCCCCTGCAGTTTCTCTGGGACAAAG
GGGGAGGGCGACGCAAGGTAGACAACAAGGCCCTCCTTACCCTCAACCAGGAGCTTCTCGTTCTGATCAAGGCCGGCTTG
CCGATTATCCAGGCGCTTGACACGGTACTGGAGCGGGTTGAGCGGGGAACTCTATTTGACGTGCTGGCGGTTGTTCGCGA
GGACGTAAAGGGTGGGATGGCTCTCTCCGATGCCCTGGAAAAGCACACCAAGGTCTTTCCCCATCTCTACGTAGCTTCGG
TGCGAGCTGGCGAGCGGACCGGGGACCTGCAGCTCACCATCCGGCGCTACATCGCGTTTCTCAAACGGGTGGAAGAAGTA
CGGAAACGATTCATTTCCGCGCTGGTCTATCCCGCAATCCTTGTTACCGTTGCAACGTTGGCCATCACTTTTCTCCTGGT
CTACGTGGTTCCGACCTTCAGCCAGGTTTATGCGGATGCCGGTTCCCAGCTTCCACTTCCCACCAGGATACTCATAGCGT
TTTCCACATCATTGAAGCAGCTTTTCCCCCTGATTATAGCGGCAGTTATCGGTGCTGTATTCTTTTTCAGGCGATGGGCC
GCTACCGAGAGCGGGCGGTATCGGGTTGATGATATAAAGATACGAATACCCTTTATCGGTGATGTCTTTTCCAAATTCGC
CGTCAGCTCGTTTACACGGACATTGGCAACAGTCATCGGTAGCGGCATACCTATTGTCGAATCGCTCAAGATGTCGGTGG
GCACATTGAATAATCGCGTGCTCGAAAGACGGATGCTCGAAGCCGTGGTCAAGATCGAGGAGGGAATGAGTCTGTCGGGT
GCCATCGAGTCGGCGAGGATCATGCCGCCTCTCGCGCTCCGGATGCTCGGCGTGGGGGAGTCGACCGGTTCCCTTGAGGA
GATGCTGAGTGATATTGCCGAATACTTCGAGGGGGAAATCGATGCCCGCCTCCACCTGCTGACAACTGCCATTGAACCCG
CGATCATGATCGTCATGGGGCTGGTTGTTGGCGTTATTATCGTAACCATGTACCTGCCGGTGTTCAAAATTGCCGGCACT
GTAGGATGA

Upstream 100 bases:

>100_bases
GTGACTATTGTGTTGTGGTGGGTGTGTTGTGATGGTGTTGCGGTCATGTTTCTGCTTGTTTTTATTTTTAATTTTACCCA
TTTTGTGCTAAGAAAATCTA

Downstream 100 bases:

>100_bases
TTGTCGCGGCGCAGCCCATTCAACGGCCCGGCTTGGAACGAAGCAATGGAAAAGCAATCTTTCAAACGAAAAACCATCGG
CCAGATCCTTGTTCAACAGG

Product: type IV pilus biogenesis protein PilC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MALYHCKLGSSEGRIITRELEAANPEMLRTSLEEQGFFVFEIKKKPLQFLWDKGGGRRKVDNKALLTLNQELLVLIKAGL
PIIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALEKHTKVFPHLYVASVRAGERTGDLQLTIRRYIAFLKRVEEV
RKRFISALVYPAILVTVATLAITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFSTSLKQLFPLIIAAVIGAVFFFRRWA
ATESGRYRVDDIKIRIPFIGDVFSKFAVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRVLERRMLEAVVKIEEGMSLSG
AIESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEIDARLHLLTTAIEPAIMIVMGLVVGVIIVTMYLPVFKIAGT
VG

Sequences:

>Translated_402_residues
MALYHCKLGSSEGRIITRELEAANPEMLRTSLEEQGFFVFEIKKKPLQFLWDKGGGRRKVDNKALLTLNQELLVLIKAGL
PIIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALEKHTKVFPHLYVASVRAGERTGDLQLTIRRYIAFLKRVEEV
RKRFISALVYPAILVTVATLAITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFSTSLKQLFPLIIAAVIGAVFFFRRWA
ATESGRYRVDDIKIRIPFIGDVFSKFAVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRVLERRMLEAVVKIEEGMSLSG
AIESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEIDARLHLLTTAIEPAIMIVMGLVVGVIIVTMYLPVFKIAGT
VG
>Mature_401_residues
ALYHCKLGSSEGRIITRELEAANPEMLRTSLEEQGFFVFEIKKKPLQFLWDKGGGRRKVDNKALLTLNQELLVLIKAGLP
IIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALEKHTKVFPHLYVASVRAGERTGDLQLTIRRYIAFLKRVEEVR
KRFISALVYPAILVTVATLAITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFSTSLKQLFPLIIAAVIGAVFFFRRWAA
TESGRYRVDDIKIRIPFIGDVFSKFAVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRVLERRMLEAVVKIEEGMSLSGA
IESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEIDARLHLLTTAIEPAIMIVMGLVVGVIIVTMYLPVFKIAGTV
G

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=403, Percent_Identity=27.7915632754342, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1786295, Length=337, Percent_Identity=27.0029673590504, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44433; Mature: 44302

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYHCKLGSSEGRIITRELEAANPEMLRTSLEEQGFFVFEIKKKPLQFLWDKGGGRRKV
CCEEEEECCCCCCCEEEEHHHHCCHHHHHHHHHHCCEEEEEECCCCHHHHHCCCCCCCCC
DNKALLTLNQELLVLIKAGLPIIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALE
CCCHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
KHTKVFPHLYVASVRAGERTGDLQLTIRRYIAFLKRVEEVRKRFISALVYPAILVTVATL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFSTSLKQLFPLIIAAVIGAVFFFRRWA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATESGRYRVDDIKIRIPFIGDVFSKFAVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRV
CCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LERRMLEAVVKIEEGMSLSGAIESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEI
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCH
DARLHLLTTAIEPAIMIVMGLVVGVIIVTMYLPVFKIAGTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALYHCKLGSSEGRIITRELEAANPEMLRTSLEEQGFFVFEIKKKPLQFLWDKGGGRRKV
CEEEEECCCCCCCEEEEHHHHCCHHHHHHHHHHCCEEEEEECCCCHHHHHCCCCCCCCC
DNKALLTLNQELLVLIKAGLPIIQALDTVLERVERGTLFDVLAVVREDVKGGMALSDALE
CCCHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
KHTKVFPHLYVASVRAGERTGDLQLTIRRYIAFLKRVEEVRKRFISALVYPAILVTVATL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITFLLVYVVPTFSQVYADAGSQLPLPTRILIAFSTSLKQLFPLIIAAVIGAVFFFRRWA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATESGRYRVDDIKIRIPFIGDVFSKFAVSSFTRTLATVIGSGIPIVESLKMSVGTLNNRV
CCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LERRMLEAVVKIEEGMSLSGAIESARIMPPLALRMLGVGESTGSLEEMLSDIAEYFEGEI
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCH
DARLHLLTTAIEPAIMIVMGLVVGVIIVTMYLPVFKIAGTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]