| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is pilQ [H]
Identifier: 39996877
GI number: 39996877
Start: 1940793
End: 1943261
Strand: Reverse
Name: pilQ [H]
Synonym: GSU1778
Alternate gene names: 39996877
Gene position: 1943261-1940793 (Counterclockwise)
Preceding gene: 39996878
Following gene: 39996876
Centisome position: 50.95
GC content: 54.96
Gene sequence:
>2469_bases ATGAGAACCATAGCGAACATGGCCATTGCCGCGGTAGTACTGACTTTTCTCGCCGGGTGCACTGCCGGCCTGACCGCGTT CAACAAGGCTGAAAAGCTTGAAGAGGAAGGTAAGCTTGACGAGGCGGTCATGAAGTTTGCCGAGGCTGCTTCAACCAATC CTCAACAGACCGAGTACCGCATGAGACTCCTCAAGGCGAGCGAAAAAGCCGCGTTCGAGCACCTCAAAAATGGGGATACG GCCTATGAGCAGCAGCTGCTAGACGAAGCTCTGCGGGAATATCAGTCGGCAGTTTCGCTCAACCCTGCTCTGGCGCGGGC AAAGCAGCGCAGCGACGAGTTGATCCGGGTGCGTAATTCACTGACCTACTATCGCGAAGGACTCGAGTTTGAAAAATCGA ACAAGCCTCGCGAAGCCCTTCAGGCCTATCGCAAGGCTCTGGATCTCAATCCCGGGAACAAGGAAATAAAAGAAGCCCTT GAAAAGCTGCTCCAGACCAGACGCACCAAGCTGGAAGGCTTTGAACTCAATCTCAAATCGACCAAGCCGATAACCCTTAA GTTCAAGGAAGCTAAGCTCAAGGACGTTTTCTATATTCTGTCCCAACTTTCAGGGATTAATTTCATCTTTGACGAGGGCG TTAAGGAACAAAACGTCACCGTTTTCCTTGAAAATGCAACTTTCAATCAAGCTCTCGATCTACTTACGAGCATGAACAAG CTGGGACGCAAAGTCCTCAATGAGAGCACTATTCTCATTTTCCCCAAGACACCGGAAAAGGCCAAACAGTATGAAGATCT GATGGTGAAGACGTTCTATCTGAACAGCCTTGATGCCAAGAAGGCCGTCAACCTTTTGCGGACGATGCTTCAGGTCAAGA AGATCTACGTGAACGAGGAACTGAATGCCCTCGTCATCAGGGATAACCCGGAACTGATCGATGTGGCGGGGAAGATTCTC GAAGCCAACGATGTGCCCGATGCCGAAGTGTTGCTGGAAGTTGAGGTTATTCAGGTTTCGAAAAACAATTCAGAGTTGTT CGGCCTGGGACTGAGCCGGTATGCCGTATCCCTCAACGCCCGCACTCCCGGGTCGGGTGGCGATTTCTTTTCTGATACCT TTGATCCGAAGGTAACCACAACGTCGAACGATACGACCACGGTGACCACTACCCAGGTGAAGAACCTCCTCAATCTCTTC AACTGGAATGGTTACCAGGGGTTCCTGACCGTTCCCAGCGCCACGTACAATTTCAGCAAACAGTTGTCCAACGCTGAGGT CCTGTCGAATCCGAAGATTCGCGTCAAAAACCGGGAAAAGTCCAAGTTTACCGTGGGCACGAGGGTGCCTATCACCACTA CGTCCAGTACCGGTTCCGTCGGCGGGGTTACCGTGAACGTCCAGTACGTGGACGTCGGGGTCAAACTCAATGCGGAGCCG GTGATTCAGTTGAACAACGAGGTCACCATAAAGCTTGGGGTCGAGGTCAGTTCCATTATCGGCGAGAAGACAGTCGGCAG CGGCGATGCCATTAGTTCGGTCGTGACCATCGGCACCCGCAACGTGGATACGGTTCTCAACTTGAAAGACGGGGAAACCA GCATCATCGGCGGTCTCATCGAGGACACAAAAAGCAAGAGCAAGCAGAAGATCTGGCTCCTGGGCGATATTCCCCTCATT GGCAGCCTGCTGTCCAGCCACAATGACAGGTATGATAAGAGTGAGCTGGTGCTTGCCATTACGCCGCGCATTGTCCGGGC AGTATCCGTCCCCGAGGCTGATGTAGCGGCCTTCTGGTCGGGCAAGGAAGATGACCCGACAGCCGTTAAGCCGTTTTCTT CCTTTGAACTGGAACCCGACTTCGCAGCCCAACCGGCCGGCGCGCCGGCCAAAGGCGCGCCCGCAGTGCCTTCGGCCAAG CCCGGCAGCGCGGCTCCTGCCGGGCAGCCGGCGACAGCGGCCGACGCACCGGCCGCTGTGGTGCAACCGGCTGCGACACC GGCTGCCGCATCAGCAGCAGGAGTTCAAGCTAGCGTGGCACCTGTTCAGCCCGCCATGCGCGGAAGCCTCAATATCGCCG CACCGGCCGGCGTTGATCTTGGCGGTCAGTTCAAGGTTGAAGTCAAGGTGACTGACGTCAAAGGGCTTGCCAAGGCACCG TTCACTCTGCTCTATGACCCCATTTTCATCGAGTATGTCGGGGCGGCGGAAGGGAACTTTCTAAATCGGGATGGCAAGCC GACGATCTTCAACGCACTGGCGGACAAAGCGGCTGGGCGAGTAGTCATCACGATGGATCGCAGTGCTGCCGGTGAGGGGG TCGACGGCTCGGGAACGCTCCTAAGTGCCACCTTCAAGGCAAAAAACAAGGGACCGGCCAGCCTCGGCCTCCAGAATGTA AAGTTCGTTGACCAAGCGAACAGGCCTCTGGATATAATTCCTTACAACACGGTGGTTGAAGTCAAGTAG
Upstream 100 bases:
>100_bases TCGACCACCGACGGCAGTGAGATCGTCATCCCGCTTGTTGAAAATCGCCCGCTGAGCGGGCAGATCCGCTGAACGCAACG ATAACTCGAGGAGCAGTTCC
Downstream 100 bases:
>100_bases TGTGACGGCTCTGATCTTGCGCATCGACAGACGGTTCCGGGGTGACAGCCGGGGGCTGAGTCTCATTGAACTCGTTTTTA CCGTGGCAATCCTCGGGATT
Product: type II secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MRTIANMAIAAVVLTFLAGCTAGLTAFNKAEKLEEEGKLDEAVMKFAEAASTNPQQTEYRMRLLKASEKAAFEHLKNGDT AYEQQLLDEALREYQSAVSLNPALARAKQRSDELIRVRNSLTYYREGLEFEKSNKPREALQAYRKALDLNPGNKEIKEAL EKLLQTRRTKLEGFELNLKSTKPITLKFKEAKLKDVFYILSQLSGINFIFDEGVKEQNVTVFLENATFNQALDLLTSMNK LGRKVLNESTILIFPKTPEKAKQYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVNEELNALVIRDNPELIDVAGKIL EANDVPDAEVLLEVEVIQVSKNNSELFGLGLSRYAVSLNARTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVKNLLNLF NWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEP VIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLI GSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWSGKEDDPTAVKPFSSFELEPDFAAQPAGAPAKGAPAVPSAK PGSAAPAGQPATAADAPAAVVQPAATPAAASAAGVQASVAPVQPAMRGSLNIAAPAGVDLGGQFKVEVKVTDVKGLAKAP FTLLYDPIFIEYVGAAEGNFLNRDGKPTIFNALADKAAGRVVITMDRSAAGEGVDGSGTLLSATFKAKNKGPASLGLQNV KFVDQANRPLDIIPYNTVVEVK
Sequences:
>Translated_822_residues MRTIANMAIAAVVLTFLAGCTAGLTAFNKAEKLEEEGKLDEAVMKFAEAASTNPQQTEYRMRLLKASEKAAFEHLKNGDT AYEQQLLDEALREYQSAVSLNPALARAKQRSDELIRVRNSLTYYREGLEFEKSNKPREALQAYRKALDLNPGNKEIKEAL EKLLQTRRTKLEGFELNLKSTKPITLKFKEAKLKDVFYILSQLSGINFIFDEGVKEQNVTVFLENATFNQALDLLTSMNK LGRKVLNESTILIFPKTPEKAKQYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVNEELNALVIRDNPELIDVAGKIL EANDVPDAEVLLEVEVIQVSKNNSELFGLGLSRYAVSLNARTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVKNLLNLF NWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEP VIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLI GSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWSGKEDDPTAVKPFSSFELEPDFAAQPAGAPAKGAPAVPSAK PGSAAPAGQPATAADAPAAVVQPAATPAAASAAGVQASVAPVQPAMRGSLNIAAPAGVDLGGQFKVEVKVTDVKGLAKAP FTLLYDPIFIEYVGAAEGNFLNRDGKPTIFNALADKAAGRVVITMDRSAAGEGVDGSGTLLSATFKAKNKGPASLGLQNV KFVDQANRPLDIIPYNTVVEVK >Mature_822_residues MRTIANMAIAAVVLTFLAGCTAGLTAFNKAEKLEEEGKLDEAVMKFAEAASTNPQQTEYRMRLLKASEKAAFEHLKNGDT AYEQQLLDEALREYQSAVSLNPALARAKQRSDELIRVRNSLTYYREGLEFEKSNKPREALQAYRKALDLNPGNKEIKEAL EKLLQTRRTKLEGFELNLKSTKPITLKFKEAKLKDVFYILSQLSGINFIFDEGVKEQNVTVFLENATFNQALDLLTSMNK LGRKVLNESTILIFPKTPEKAKQYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVNEELNALVIRDNPELIDVAGKIL EANDVPDAEVLLEVEVIQVSKNNSELFGLGLSRYAVSLNARTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVKNLLNLF NWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEP VIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLI GSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWSGKEDDPTAVKPFSSFELEPDFAAQPAGAPAKGAPAVPSAK PGSAAPAGQPATAADAPAAVVQPAATPAAASAAGVQASVAPVQPAMRGSLNIAAPAGVDLGGQFKVEVKVTDVKGLAKAP FTLLYDPIFIEYVGAAEGNFLNRDGKPTIFNALADKAAGRVVITMDRSAAGEGVDGSGTLLSATFKAKNKGPASLGLQNV KFVDQANRPLDIIPYNTVVEVK
Specific function: Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=304, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=6e-15, Organism=Escherichia coli, GI1789793, Length=425, Percent_Identity=22.5882352941176, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 88585; Mature: 88585
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIANMAIAAVVLTFLAGCTAGLTAFNKAEKLEEEGKLDEAVMKFAEAASTNPQQTEYR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH MRLLKASEKAAFEHLKNGDTAYEQQLLDEALREYQSAVSLNPALARAKQRSDELIRVRNS HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LTYYREGLEFEKSNKPREALQAYRKALDLNPGNKEIKEALEKLLQTRRTKLEGFELNLKS HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC TKPITLKFKEAKLKDVFYILSQLSGINFIFDEGVKEQNVTVFLENATFNQALDLLTSMNK CCCEEEEECHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHH LGRKVLNESTILIFPKTPEKAKQYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVNEE HHHHHHCCCEEEEECCCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC LNALVIRDNPELIDVAGKILEANDVPDAEVLLEVEVIQVSKNNSELFGLGLSRYAVSLNA CCEEEECCCCCHHHHHHHHEECCCCCCHHEEEEEEEEEEECCCCEEEEEEHHHEEEEEEC RTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVKNLLNLFNWNGYQGFLTVPSATYNFSK CCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH QLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEP HCCCCHHHCCCCEEEECCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEEEECCCC VIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLI EEEECCEEEEEECCCHHHHHCCCCCCCCHHHHHEEEECCCCCCEEEEECCCCCHHHHHHH EDTKSKSKQKIWLLGDIPLIGSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWS HHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCCCCHHHHEEC GKEDDPTAVKPFSSFELEPDFAAQPAGAPAKGAPAVPSAKPGSAAPAGQPATAADAPAAV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH VQPAATPAAASAAGVQASVAPVQPAMRGSLNIAAPAGVDLGGQFKVEVKVTDVKGLAKAP CCCCCCCCHHHHCCCEEECCCCCHHHCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCC FTLLYDPIFIEYVGAAEGNFLNRDGKPTIFNALADKAAGRVVITMDRSAAGEGVDGSGTL HHEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE LSATFKAKNKGPASLGLQNVKFVDQANRPLDIIPYNTVVEVK EEEEEECCCCCCHHCCCCCEEHHHCCCCCEEEECCCEEEEEC >Mature Secondary Structure MRTIANMAIAAVVLTFLAGCTAGLTAFNKAEKLEEEGKLDEAVMKFAEAASTNPQQTEYR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH MRLLKASEKAAFEHLKNGDTAYEQQLLDEALREYQSAVSLNPALARAKQRSDELIRVRNS HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LTYYREGLEFEKSNKPREALQAYRKALDLNPGNKEIKEALEKLLQTRRTKLEGFELNLKS HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC TKPITLKFKEAKLKDVFYILSQLSGINFIFDEGVKEQNVTVFLENATFNQALDLLTSMNK CCCEEEEECHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHH LGRKVLNESTILIFPKTPEKAKQYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVNEE HHHHHHCCCEEEEECCCCHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC LNALVIRDNPELIDVAGKILEANDVPDAEVLLEVEVIQVSKNNSELFGLGLSRYAVSLNA CCEEEECCCCCHHHHHHHHEECCCCCCHHEEEEEEEEEEECCCCEEEEEEHHHEEEEEEC RTPGSGGDFFSDTFDPKVTTTSNDTTTVTTTQVKNLLNLFNWNGYQGFLTVPSATYNFSK CCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH QLSNAEVLSNPKIRVKNREKSKFTVGTRVPITTTSSTGSVGGVTVNVQYVDVGVKLNAEP HCCCCHHHCCCCEEEECCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEEEECCCC VIQLNNEVTIKLGVEVSSIIGEKTVGSGDAISSVVTIGTRNVDTVLNLKDGETSIIGGLI EEEECCEEEEEECCCHHHHHCCCCCCCCHHHHHEEEECCCCCCEEEEECCCCCHHHHHHH EDTKSKSKQKIWLLGDIPLIGSLLSSHNDRYDKSELVLAITPRIVRAVSVPEADVAAFWS HHHHCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCCCCHHHHEEC GKEDDPTAVKPFSSFELEPDFAAQPAGAPAKGAPAVPSAKPGSAAPAGQPATAADAPAAV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH VQPAATPAAASAAGVQASVAPVQPAMRGSLNIAAPAGVDLGGQFKVEVKVTDVKGLAKAP CCCCCCCCHHHHCCCEEECCCCCHHHCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCCC FTLLYDPIFIEYVGAAEGNFLNRDGKPTIFNALADKAAGRVVITMDRSAAGEGVDGSGTL HHEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCE LSATFKAKNKGPASLGLQNVKFVDQANRPLDIIPYNTVVEVK EEEEEECCCCCCHHCCCCCEEHHHCCCCCEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]