| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is ribD [H]
Identifier: 39996788
GI number: 39996788
Start: 1847264
End: 1848373
Strand: Direct
Name: ribD [H]
Synonym: GSU1688
Alternate gene names: 39996788
Gene position: 1847264-1848373 (Clockwise)
Preceding gene: 39996787
Following gene: 39996789
Centisome position: 48.43
GC content: 59.91
Gene sequence:
>1110_bases ATGACATCTTTTCATGAAAACATGATGCGGCGTGCCCTTTCTCTCGCCCGGAAAGGCATTGGCAAGACATCCCCCAACCC TGTGGTAGGGTGTGTGATCGTGCGTGAGGGTGTCGTGGTCGGAGAGGGGTGGCACCGCAAGGCCGGCACCCCCCATGCGG AGGTCCACGCGTTGCGCGAAGCCGGCCCGCTGGCTCGCGGAGCTGATGTCTATGTGACGCTCGAACCATGCTCCCACTTC GGCCGCACCCCCCCGTGCGCAGATGCCCTGGTTGCTGCGGGAGTAGCACGTGTCTTCGTGGGCATGGTCGATCCGAACCC CACGGTCTGCGGCAAGGGGATCACCCGCCTCGAAGCGGTAGGTATTCAGGTAATTACCGGCGTGTTGGGTAAGGAGTGTC GGCTGATCAATGAACCCTTTGTGAAGCACGTGTCAACAGGGCTTCCTTTTCTCACCCTCAAGAGCGCTCTTACCCTTGAT GGGAAGACAGCTACTGCGCTTGGTGACTCACGCTGGATAACTAACGATAAATCAAGACGATATGTGCATCAGCTTCGAGC AGAGGTAGATGCCGTTATGGTGGGAGTCGGAACCCTGCTGGCCGATAACCCCGAACTAACCGTGCGCCACGTGAAGGGGA AAAATCCTCTCAGAATCATTGTGGACAGCAGCCTAAAGATACCAAATGAGTCGCGGGTGCTGGGAGACGACTTGGCCCGC GGCACCATCATCGCGACCACGTCGGATGATCAGGAGCGAATCGGGTTTCTGGAGACGCGGGGAGCGCAGGTCATCCGTTG CGCATCCGACAAAGGTCGCGTGGACCTGCGGGATCTCATGCAGCGCCTCGGCGCCAAGGGAATCCAGTCGATCCTGCTGG AGGGGGGGAGCGAACTGGCTGGTGCGGCTCTCCGTCAAGGACTGATCGACAAGTTCATTCTCTTTTACGCCCCCATAGTT CTGGGCGGTGCCGCCGGCATCGGGTTGTTCGGCGGAAAATCGGTGGAGCGCATGGGGCGGGCATTTCGCCTGGAAACGGC GCGGGTGCGGCGTTTCGGCGGCGACGTCATGATCGAGGCCTATCCGGAGGAAGCATGTTCACTGGATTGA
Upstream 100 bases:
>100_bases GTCCGCTTTGCTTCGGTCTATCGTTCCTTCAAGGATGTCAACGAGTTTATGTCCGAGCTCCAGGATCTTCTCAAGAAGTA GCAGTCTCACTCCCAATCCC
Downstream 100 bases:
>100_bases TTGAAGACGTGGGTACCGCGCGGCGGTTGGAGCGCCGGGGAGAGGCGGCACGCCTTGCCGTGGCCACAGCGCTGCCGCTT GAGTCCGTGAATCTGGGCGA
Product: riboflavin biosynthesis protein RibD
Products: NA
Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALREAGPLARGADVYVTLEPCSHF GRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLD GKTATALGDSRWITNDKSRRYVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDLAR GTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSELAGAALRQGLIDKFILFYAPIV LGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMIEAYPEEACSLD
Sequences:
>Translated_369_residues MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALREAGPLARGADVYVTLEPCSHF GRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLD GKTATALGDSRWITNDKSRRYVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDLAR GTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSELAGAALRQGLIDKFILFYAPIV LGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMIEAYPEEACSLD >Mature_368_residues TSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALREAGPLARGADVYVTLEPCSHFG RTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDG KTATALGDSRWITNDKSRRYVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDLARG TIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSELAGAALRQGLIDKFILFYAPIVL GGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMIEAYPEEACSLD
Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]
COG id: COG0117
COG function: function code H; Pyrimidine deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the HTP reductase family [H]
Homologues:
Organism=Escherichia coli, GI1786616, Length=367, Percent_Identity=44.141689373297, Blast_Score=292, Evalue=2e-80, Organism=Escherichia coli, GI145693172, Length=151, Percent_Identity=33.112582781457, Blast_Score=71, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 - InterPro: IPR004794 - InterPro: IPR011549 - InterPro: IPR002734 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]
EC number: =3.5.4.26; =1.1.1.193 [H]
Molecular weight: Translated: 39518; Mature: 39387
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEECCCCCCCCCCCHHHHHHHHH AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV CCCCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHEECCCEEEECCCCCCCCCCHHHH YVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDLAR HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHCC GTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSELA CEEEEECCCCHHHCCHHCCCCCEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHCCCCHHH GAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMIEA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE YPEEACSLD CCHHHCCCC >Mature Secondary Structure TSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEECCCCCCCCCCCHHHHHHHHH AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV CCCCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHEECCCEEEECCCCCCCCCCHHHH YVHQLRAEVDAVMVGVGTLLADNPELTVRHVKGKNPLRIIVDSSLKIPNESRVLGDDLAR HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHCC GTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSELA CEEEEECCCCHHHCCHHCCCCCEEEEECCCCCCCCHHHHHHHHCHHHHHHHHHCCCCHHH GAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMIEA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE YPEEACSLD CCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8522537 [H]