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The map label for this gene is rtcB [C]

Identifier: 39996784

GI number: 39996784

Start: 1844111

End: 1845568

Strand: Reverse

Name: rtcB [C]

Synonym: GSU1684

Alternate gene names: 39996784

Gene position: 1845568-1844111 (Counterclockwise)

Preceding gene: 39996785

Following gene: 39996781

Centisome position: 48.39

GC content: 62.41

Gene sequence:

>1458_bases
ATGGCGGCACCGGCAGCGCTGAAGAGAATATCTGCAACGGTTTGGGAGCTTCCCGTAAGCTACAAAAAGGGAATGCTCGT
TCCCGCCCGCATCATTGCCACGGAAAAACTCATCAACGCCATGGATGCTGGCGTTTTCGAGCAGGTATCCAACGTGGCCT
GTCTGCCGGGCATCCAGAAATACGCCTTCTGCATGCCTGACGGCCACTGGGGGTACGGCTTTCCCATCGGCGGTCTGGCG
GCCATGGACCCGGAGACGGGGGTCATTTCTCCCGGCGGCATCGGCTTCGATATCAACTGTGGCATGCGGCTGGTCCTGAC
CACTCTCACCTACGAAGAGGTGAAGCCGCGCCTGCGCGAACTGGTGGATGCCCTCTTCTACCGGGTGCCGGCCGGGGTCG
GGAGCCATGGTTTTGTGCGGCTGTCCCACGATGAGTTCTGCCGCGTGGCCGAGCAGGGCTCATCGTGGTGCCTGAAACAT
GGCTATGCCTGGCCCGAAGACCTGGAGATGACCGAAGAACATGGCTGCTTCACTGGAGCCGATGCCACGAAGGTCAGCCA
GAGAGCCGTTGACCGGGGATACAACCAGATCGGGACCCTCGGCTCGGGCAACCACTACCTGGAAGTCCAGGTGGCCCGCC
CCGAGAACATTTTCGACGAGGATACCGCCCGGGCATTCGGCATTACCGTGCCGAACCAGGTGGTGATCATGTTCCACTGC
GGCAGCCGCGGCTTCGGCCACCAGGTGGCCACCGACTATCTCCAGCTCTTCCTGTCGGTCATGGAGAAAAAGTACGGCAT
CCGCACCAATGACCGCGAACTCGCCTGTGCCCCCTTCCGCTCCCGCGAGGGGCAGGACTACTTTGCCGCCATGAAGTGCG
CGGTGAACATGGCCTTTGCCAATCGCCAAGTCATCCTCCATCGCATCCGCGAGGTCTTCTCGGACGTATTCGGTCGCGAC
CCGGGCGATCTGGGCATGGATATGGTCTACGACGTGGCCCACAACACCGCCAAGCTGGAGACCCACCTGGTGGACGGGAA
AAAACGCGAACTGCTGGTTCATCGCAAGGGGGCCACCCGGGCCTTTGGCCCCGGCATGGAGGGGATTCCCGCCCGCTACC
GGGAAACGGGCCAGCCGGTCATTATCGGCGGCAGCATGGAAACCGGCTCCTATCTGCTGGCAGGCGACCCGGGAGGCGGC
GACACCTTTTTCACCACGGCCCACGGCAGCGGCCGGACCATGAGCCGCCATCAGGCGAAAAAGTTGATCAAGGGACAGAA
GCTGCAGCGGGATATGGAGGAGCGCGGCATTTACGTGCGGACCGCGTCCTGGGGAGGACTGGCGGAAGAGGCGGGGCAGG
CCTACAAAAACATTGATGACGTGGCCGAGGCCACTGAGTTGTCGCATCTGAGCCGGCGGGTCGCACGGCTCGTGCCCATC
GGAAATGTCAAAGGTTGA

Upstream 100 bases:

>100_bases
ACCATAAGGTTGCCATCTTCGAGGAGTGGTTGGCTGAATTTGCGGTATAGTTGAAACAGTGAACAGTGAAGGATTCACTC
ACAGGAGAGGTGAACGAGCC

Downstream 100 bases:

>100_bases
GCAGGTGATGCTGAAATTTTGACGCGGGCAATGGGCTCGTGCATTCAGATTTTCAGATCAACGACCAGGCCCTTGAGCTC
AAGTATCTTGTTGGTGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MAAPAALKRISATVWELPVSYKKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQKYAFCMPDGHWGYGFPIGGLA
AMDPETGVISPGGIGFDINCGMRLVLTTLTYEEVKPRLRELVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKH
GYAWPEDLEMTEEHGCFTGADATKVSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHC
GSRGFGHQVATDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIREVFSDVFGRD
PGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATRAFGPGMEGIPARYRETGQPVIIGGSMETGSYLLAGDPGGG
DTFFTTAHGSGRTMSRHQAKKLIKGQKLQRDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPI
GNVKG

Sequences:

>Translated_485_residues
MAAPAALKRISATVWELPVSYKKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQKYAFCMPDGHWGYGFPIGGLA
AMDPETGVISPGGIGFDINCGMRLVLTTLTYEEVKPRLRELVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKH
GYAWPEDLEMTEEHGCFTGADATKVSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHC
GSRGFGHQVATDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIREVFSDVFGRD
PGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATRAFGPGMEGIPARYRETGQPVIIGGSMETGSYLLAGDPGGG
DTFFTTAHGSGRTMSRHQAKKLIKGQKLQRDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPI
GNVKG
>Mature_484_residues
AAPAALKRISATVWELPVSYKKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQKYAFCMPDGHWGYGFPIGGLAA
MDPETGVISPGGIGFDINCGMRLVLTTLTYEEVKPRLRELVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHG
YAWPEDLEMTEEHGCFTGADATKVSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHCG
SRGFGHQVATDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIREVFSDVFGRDP
GDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATRAFGPGMEGIPARYRETGQPVIIGGSMETGSYLLAGDPGGGD
TFFTTAHGSGRTMSRHQAKKLIKGQKLQRDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPIG
NVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=498, Percent_Identity=44.1767068273092, Blast_Score=393, Evalue=1e-109,
Organism=Escherichia coli, GI2367224, Length=449, Percent_Identity=29.1759465478842, Blast_Score=138, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17506665, Length=442, Percent_Identity=47.5113122171946, Blast_Score=403, Evalue=1e-112,
Organism=Drosophila melanogaster, GI24585217, Length=497, Percent_Identity=43.0583501006036, Blast_Score=389, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53219; Mature: 53088

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPAALKRISATVWELPVSYKKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQK
CCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
YAFCMPDGHWGYGFPIGGLAAMDPETGVISPGGIGFDINCGMRLVLTTLTYEEVKPRLRE
HEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHH
LVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTEEHGCFTGA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHCCCCCCC
DATKVSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHC
CHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEC
GSRGFGHQVATDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
NRQVILHRIREVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATR
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHEEEEECCCCCCEEEEEECCCCC
AFGPGMEGIPARYRETGQPVIIGGSMETGSYLLAGDPGGGDTFFTTAHGSGRTMSRHQAK
CCCCCCCCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHH
KLIKGQKLQRDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPI
HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNVKG
CCCCC
>Mature Secondary Structure 
AAPAALKRISATVWELPVSYKKGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQK
CCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
YAFCMPDGHWGYGFPIGGLAAMDPETGVISPGGIGFDINCGMRLVLTTLTYEEVKPRLRE
HEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHH
LVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTEEHGCFTGA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHCCCCCCC
DATKVSQRAVDRGYNQIGTLGSGNHYLEVQVARPENIFDEDTARAFGITVPNQVVIMFHC
CHHHHHHHHHHCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEC
GSRGFGHQVATDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
NRQVILHRIREVFSDVFGRDPGDLGMDMVYDVAHNTAKLETHLVDGKKRELLVHRKGATR
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHEEEEECCCCCCEEEEEECCCCC
AFGPGMEGIPARYRETGQPVIIGGSMETGSYLLAGDPGGGDTFFTTAHGSGRTMSRHQAK
CCCCCCCCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHH
KLIKGQKLQRDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPI
HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNVKG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA