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The map label for this gene is 39996765

Identifier: 39996765

GI number: 39996765

Start: 1828742

End: 1829557

Strand: Reverse

Name: 39996765

Synonym: GSU1665

Alternate gene names: NA

Gene position: 1829557-1828742 (Counterclockwise)

Preceding gene: 39996768

Following gene: 39996762

Centisome position: 47.97

GC content: 62.5

Gene sequence:

>816_bases
GTGCCCGTCCGGGTGGAGCAGAACAGCGCCGGCTGGCGAGTGCTCGTTCCGGCGTCGGCTTTTGCACGAGCTCTCAGGGA
GGTGCGCCTCTTTGAGCAAGAGAACAGCAATTGGCCCCCTCCCCCACCACCGGCTCGCCCATTGGAAGAGAACACCCTCT
CCACCCTTTCAGTACTGCTTCTGCTCGCGATTTTCCACAATCTTACCCGGTTCGGCGTAACCTTGCCCGGTCACGCTTCC
TCCGACTGGTTCGACCTCGGTAATGCCAATGCAGCTGCCATTCTCGACGGGCAGTGGTGGCGAGCCGTGACCGCACTGAC
ACTCCATGCCGATGTTTCGCACCTTGCAGGCAATCTCGCCATCGGCGGCTTCATCGCCGTCCTCCTCTGCCGTGAGCTCG
GAGCGGGCTTGTCATGGGCGCTCCTGCTCGGCTCCGGTATTCTCGGCAACCTCACCAACGCTTACTTTCAGCTTCCTGCT
CATCGCTCAGTGGGGGCCTCGACTGCAGTTTTCGGCGCAGTCGGTATCTTCGCTGCGCTCAGTGCTATGCGCTACGTCCA
TCACCCGAACCGGCGGGGGTTGATTCCCGCCGCCGCAGGACTGGCCCTGCTGGCCGCGTTAGGCACGGAAGGCGAGCACA
CCGACCTGGGCGCCCACCTTTTCGGATTTCTCTGGGGAATCGGATTCGGCATTGCGGCGGAATTCAGGCTGGCAACCAGC
GGTCGGCCGGGACGGATGGTCAACGCGTTGTTGGCACTGGCCAGCGCTCTTATCGTTATAGTTGCGTGGTGGAAGGCATT
CACCGCGGGAAGCTGA

Upstream 100 bases:

>100_bases
CGATCTGTGGTTGCCTTTGCCCTCCGACTCGGGAATCGCCACCGACATTCTGACCGCACAGAATGCGCGGCTCTGGGCGC
TGGTGCTGGAGGCGCGGTAC

Downstream 100 bases:

>100_bases
GTTATTTCACTCTATGCCCTTCCCCGCCCGGGACGGCCACGAGCACCATTCGGGGGAAGAGGCTGCGATCCGCCTCGGCC
ATCCGTTCCGGGCCCAGCCG

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Membrane Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Membrane Protein

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPVRVEQNSAGWRVLVPASAFARALREVRLFEQENSNWPPPPPPARPLEENTLSTLSVLLLLAIFHNLTRFGVTLPGHAS
SDWFDLGNANAAAILDGQWWRAVTALTLHADVSHLAGNLAIGGFIAVLLCRELGAGLSWALLLGSGILGNLTNAYFQLPA
HRSVGASTAVFGAVGIFAALSAMRYVHHPNRRGLIPAAAGLALLAALGTEGEHTDLGAHLFGFLWGIGFGIAAEFRLATS
GRPGRMVNALLALASALIVIVAWWKAFTAGS

Sequences:

>Translated_271_residues
MPVRVEQNSAGWRVLVPASAFARALREVRLFEQENSNWPPPPPPARPLEENTLSTLSVLLLLAIFHNLTRFGVTLPGHAS
SDWFDLGNANAAAILDGQWWRAVTALTLHADVSHLAGNLAIGGFIAVLLCRELGAGLSWALLLGSGILGNLTNAYFQLPA
HRSVGASTAVFGAVGIFAALSAMRYVHHPNRRGLIPAAAGLALLAALGTEGEHTDLGAHLFGFLWGIGFGIAAEFRLATS
GRPGRMVNALLALASALIVIVAWWKAFTAGS
>Mature_270_residues
PVRVEQNSAGWRVLVPASAFARALREVRLFEQENSNWPPPPPPARPLEENTLSTLSVLLLLAIFHNLTRFGVTLPGHASS
DWFDLGNANAAAILDGQWWRAVTALTLHADVSHLAGNLAIGGFIAVLLCRELGAGLSWALLLGSGILGNLTNAYFQLPAH
RSVGASTAVFGAVGIFAALSAMRYVHHPNRRGLIPAAAGLALLAALGTEGEHTDLGAHLFGFLWGIGFGIAAEFRLATSG
RPGRMVNALLALASALIVIVAWWKAFTAGS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28632; Mature: 28501

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVRVEQNSAGWRVLVPASAFARALREVRLFEQENSNWPPPPPPARPLEENTLSTLSVLL
CCCEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
LLAIFHNLTRFGVTLPGHASSDWFDLGNANAAAILDGQWWRAVTALTLHADVSHLAGNLA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
IGGFIAVLLCRELGAGLSWALLLGSGILGNLTNAYFQLPAHRSVGASTAVFGAVGIFAAL
HHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHH
SAMRYVHHPNRRGLIPAAAGLALLAALGTEGEHTDLGAHLFGFLWGIGFGIAAEFRLATS
HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECC
GRPGRMVNALLALASALIVIVAWWKAFTAGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVRVEQNSAGWRVLVPASAFARALREVRLFEQENSNWPPPPPPARPLEENTLSTLSVLL
CCEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
LLAIFHNLTRFGVTLPGHASSDWFDLGNANAAAILDGQWWRAVTALTLHADVSHLAGNLA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
IGGFIAVLLCRELGAGLSWALLLGSGILGNLTNAYFQLPAHRSVGASTAVFGAVGIFAAL
HHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHH
SAMRYVHHPNRRGLIPAAAGLALLAALGTEGEHTDLGAHLFGFLWGIGFGIAAEFRLATS
HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECC
GRPGRMVNALLALASALIVIVAWWKAFTAGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA