Click here to switch to the map view.

The map label for this gene is ribF [H]

Identifier: 39996587

GI number: 39996587

Start: 1630018

End: 1630986

Strand: Direct

Name: ribF [H]

Synonym: GSU1487

Alternate gene names: 39996587

Gene position: 1630018-1630986 (Clockwise)

Preceding gene: 39996586

Following gene: 308513301

Centisome position: 42.74

GC content: 59.96

Gene sequence:

>969_bases
ATGAAAATCTTCCGGAGCATTGACGAAATTCGTGAACCGTTGCCGAGCCCGGTGGTAACCATCGGCAACTTCGACGGTGT
TCATCTCGGCCACCGCGAGATATTCAGACGGGTCAAGCGTGAGGCCGCGCGACTGGACGGGGTTTCCATGGTGATCACCT
TCACCCCCCATCCACTGAAGGTCCTGGGGCTCCGGAAGGAGTTGCGTCTCATCAACACCTATGCCGAGAAGGAGCTTCTT
ATCGAAGCGTCAGGGATTGATTGCCTTCTGACGATCCCCTTTACCGCCGAGTTCGCTGCCATCGGCGCCGAACGGTTCGT
GGGCGAGATCCTCGTGGGACGGATCGGGGTGAAGAAGCTCGTCATCGGTTATGATTACGCCTTTGGCAGGAACCGCGAAG
GTGATGTGGCCATGCTCCGGAGGATGGGCGAAGAGCACGGTTTCGAGGTGGAAGTGCTCGAGCAGATCGCCAGCGGCGAA
ACGGTGTACAGCAGCAGTGCCGTGCGGCGGATGATCGCGGCGGGCAATGTTCGTGAGGTGGTCAGCCTGATCGGCCGGCA
CTATTCAGTCGGGGGGACGGTGGTTCACGGCCGCCGGCGCGGGAAGGATCTGGGTTTCCCCACGGCCAATCTCCGGACCG
AAAAGGAATTGATCCCTGCCGCCGGGGTCTATGCGGTCAAGGTGCGAGTGGACGATACCATTCGGGACGGGGCCTGCAAT
ATCGGCAACAACCCCACCTTCGGCAATGAAGAGGTGACTGTCGAGGTTCATATCCTCGACTTCGACGGTGACCTCTACGG
CAAGGAAATCCGTGTGTATTTCGTGGATCGGGTCCGTGAGGAACTGCGCTATCCCGATCTCAACGCCCTCAAGGAGGGAA
TCAGCCGGGATGTGGCCCGGTGTCGCGAGCTTCTGGCCGGCGTCTCCATCATCGAATACCGCGACTATCTCGGTGGTGAC
GCAGCGTGA

Upstream 100 bases:

>100_bases
TGTATATGATGTACGAGATCAGCGTCTGGCTCGTCCTCCTCTTCGGCAAGAAAAAGCCGGTGGAGGCAGTGGCCGGCGAG
GGGCCGACCGGCGCCGCGTC

Downstream 100 bases:

>100_bases
GAGGAGTACCCGGCGACAGACGTTTCTGGCTCGGAATCGGGATCAGCGTGTTTTTTGTGGCGCTGCTGGTGCGCTCGGTG
GACGGGCATGAACTTCTGCG

Product: riboflavin biosynthesis protein RibF

Products: NA

Alternate protein names: Riboflavin kinase; Flavokinase; FMN adenylyltransferase; FAD pyrophosphorylase; FAD synthase [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKIFRSIDEIREPLPSPVVTIGNFDGVHLGHREIFRRVKREAARLDGVSMVITFTPHPLKVLGLRKELRLINTYAEKELL
IEASGIDCLLTIPFTAEFAAIGAERFVGEILVGRIGVKKLVIGYDYAFGRNREGDVAMLRRMGEEHGFEVEVLEQIASGE
TVYSSSAVRRMIAAGNVREVVSLIGRHYSVGGTVVHGRRRGKDLGFPTANLRTEKELIPAAGVYAVKVRVDDTIRDGACN
IGNNPTFGNEEVTVEVHILDFDGDLYGKEIRVYFVDRVREELRYPDLNALKEGISRDVARCRELLAGVSIIEYRDYLGGD
AA

Sequences:

>Translated_322_residues
MKIFRSIDEIREPLPSPVVTIGNFDGVHLGHREIFRRVKREAARLDGVSMVITFTPHPLKVLGLRKELRLINTYAEKELL
IEASGIDCLLTIPFTAEFAAIGAERFVGEILVGRIGVKKLVIGYDYAFGRNREGDVAMLRRMGEEHGFEVEVLEQIASGE
TVYSSSAVRRMIAAGNVREVVSLIGRHYSVGGTVVHGRRRGKDLGFPTANLRTEKELIPAAGVYAVKVRVDDTIRDGACN
IGNNPTFGNEEVTVEVHILDFDGDLYGKEIRVYFVDRVREELRYPDLNALKEGISRDVARCRELLAGVSIIEYRDYLGGD
AA
>Mature_322_residues
MKIFRSIDEIREPLPSPVVTIGNFDGVHLGHREIFRRVKREAARLDGVSMVITFTPHPLKVLGLRKELRLINTYAEKELL
IEASGIDCLLTIPFTAEFAAIGAERFVGEILVGRIGVKKLVIGYDYAFGRNREGDVAMLRRMGEEHGFEVEVLEQIASGE
TVYSSSAVRRMIAAGNVREVVSLIGRHYSVGGTVVHGRRRGKDLGFPTANLRTEKELIPAAGVYAVKVRVDDTIRDGACN
IGNNPTFGNEEVTVEVHILDFDGDLYGKEIRVYFVDRVREELRYPDLNALKEGISRDVARCRELLAGVSIIEYRDYLGGD
AA

Specific function: Unknown

COG id: COG0196

COG function: function code H; FAD synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribF family [H]

Homologues:

Organism=Escherichia coli, GI1786208, Length=307, Percent_Identity=36.8078175895765, Blast_Score=204, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI17541882, Length=122, Percent_Identity=36.8852459016393, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015864
- InterPro:   IPR015865
- InterPro:   IPR002606
- InterPro:   IPR014729 [H]

Pfam domain/function: PF06574 FAD_syn; PF01687 Flavokinase [H]

EC number: =2.7.1.26; =2.7.7.2 [H]

Molecular weight: Translated: 35846; Mature: 35846

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFRSIDEIREPLPSPVVTIGNFDGVHLGHREIFRRVKREAARLDGVSMVITFTPHPLK
CCHHHHHHHHHCCCCCCEEEECCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCE
VLGLRKELRLINTYAEKELLIEASGIDCLLTIPFTAEFAAIGAERFVGEILVGRIGVKKL
EHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHE
VIGYDYAFGRNREGDVAMLRRMGEEHGFEVEVLEQIASGETVYSSSAVRRMIAAGNVREV
EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHHH
VSLIGRHYSVGGTVVHGRRRGKDLGFPTANLRTEKELIPAAGVYAVKVRVDDTIRDGACN
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCCCCC
IGNNPTFGNEEVTVEVHILDFDGDLYGKEIRVYFVDRVREELRYPDLNALKEGISRDVAR
CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
CRELLAGVSIIEYRDYLGGDAA
HHHHHHCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIFRSIDEIREPLPSPVVTIGNFDGVHLGHREIFRRVKREAARLDGVSMVITFTPHPLK
CCHHHHHHHHHCCCCCCEEEECCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCE
VLGLRKELRLINTYAEKELLIEASGIDCLLTIPFTAEFAAIGAERFVGEILVGRIGVKKL
EHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHE
VIGYDYAFGRNREGDVAMLRRMGEEHGFEVEVLEQIASGETVYSSSAVRRMIAAGNVREV
EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHHH
VSLIGRHYSVGGTVVHGRRRGKDLGFPTANLRTEKELIPAAGVYAVKVRVDDTIRDGACN
HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCCCCC
IGNNPTFGNEEVTVEVHILDFDGDLYGKEIRVYFVDRVREELRYPDLNALKEGISRDVAR
CCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
CRELLAGVSIIEYRDYLGGDAA
HHHHHHCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]