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The map label for this gene is yhaO [H]

Identifier: 39996522

GI number: 39996522

Start: 1557739

End: 1558869

Strand: Direct

Name: yhaO [H]

Synonym: GSU1421

Alternate gene names: 39996522

Gene position: 1557739-1558869 (Clockwise)

Preceding gene: 39996521

Following gene: 39996523

Centisome position: 40.84

GC content: 62.6

Gene sequence:

>1131_bases
ATGCCCATCCGATTCCTCCATACCGCCGACCTGCATCTCGACTCGCCCCTGCGCACGTTCGGCGACCTTGCCCGTGAGCG
CCGTCGCGACTTCCTGAAGACCTTCGACCGGATCGTAAATCTTGCCATCAAGCGAGAGGTGGACTGCATCCTGATAGCAG
GTGACCTGTTCGACTCCACATCGGTTGGCGCCGAAACGGTGGGGCGCGTGCAGGATGCCTTTTCCCGGCTGGCGGGGCGT
GGGGTGCAGGTCGTCCTGATCCCCGGCACCCACGACAACATCATCTCGGCGGAGAGTGTCTACAGCCGCTACCAGTTTAC
TGGCGTTCATATTCTACGCGAACCGGCGGTGGATGAGCCGTTGCGGCTGGACATTCGTGGCGAGGCAGTGTTTTTCTACG
GTTTTGCCTATCGCTCGGACCGTTCGCGGGAAGCCCTCGAATCCATGCGTCGCCGCTCCGGCGACGGCATCCATGTGGGA
CTTCTGCACGGCTCCCTCAAGGGAAATCCCGAGTGGGAGATGCGCAAGAAGGACATTCCCTTTTCCGTGGCCGATCTGGT
CGCGCTCGACCTGGACTACATCGCGCTCGGCCACTACCATGACGCCGCCTGCCTGGAAGAGGGGGGGCGCGTCATTGCCT
GTTATCCCGGCTCGCCGGAGGGGAAAAAGTTCGGCGAGAACGGTCCGCGTTACGCCTTGATCGTGGAGGTGGCGCCGGGC
AATGCCTCGGTTGAACGGGTCGAGGTGCAGACGCGGATCATCCGGGAGTTCAACGTCGACGCCTCGCTCTTTGCCGAGCC
GGCGGCCCTTGAAGCGGAACTGGCACGTCTTGGCACTTCCGATACCGTCGGGCGCATCAGGCTGTGCGGGACCGTGGAAG
AACCCCTGGACACGGCCAATCTGTCCGGGCGGGTCAAAGGGAACTTCGCCTGGCTCGAGCTGGTGGACGAAACCGATCTT
TACAATAGCGGTCATGTGAAGCGGATGGAGCGGGAGGACTCGATCCGGGGCCTTTTCATCCGCAAGATCCATGAACGATA
CGACGCAGCAGGTTCCGACGCCGAACGCGAACTGTGCCGCGACGCCCTCAGGCTCGTCATGGGGCGGTTCAGTCGTGGAG
GGGGGAATTGA

Upstream 100 bases:

>100_bases
TCTCCCATTCTCGGGCCCAAGGGAAATCGTGAGTTTCTGATCCACCTTAAAAAGGCGGTTGGGGAGACCCCGCCCCATAA
CCGGTAATCCGACATCAGCC

Downstream 100 bases:

>100_bases
TGCTCTGGATCAGTCGGGTCGAACTCCCCGCATTCGGCCGGTTCAGGGGGGCGTCGTTCACCTTCAGGCCGGGCATGAAC
CTGGTTTACGGCCGCAACGA

Product: nuclease SbcCD subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MPIRFLHTADLHLDSPLRTFGDLARERRRDFLKTFDRIVNLAIKREVDCILIAGDLFDSTSVGAETVGRVQDAFSRLAGR
GVQVVLIPGTHDNIISAESVYSRYQFTGVHILREPAVDEPLRLDIRGEAVFFYGFAYRSDRSREALESMRRRSGDGIHVG
LLHGSLKGNPEWEMRKKDIPFSVADLVALDLDYIALGHYHDAACLEEGGRVIACYPGSPEGKKFGENGPRYALIVEVAPG
NASVERVEVQTRIIREFNVDASLFAEPAALEAELARLGTSDTVGRIRLCGTVEEPLDTANLSGRVKGNFAWLELVDETDL
YNSGHVKRMEREDSIRGLFIRKIHERYDAAGSDAERELCRDALRLVMGRFSRGGGN

Sequences:

>Translated_376_residues
MPIRFLHTADLHLDSPLRTFGDLARERRRDFLKTFDRIVNLAIKREVDCILIAGDLFDSTSVGAETVGRVQDAFSRLAGR
GVQVVLIPGTHDNIISAESVYSRYQFTGVHILREPAVDEPLRLDIRGEAVFFYGFAYRSDRSREALESMRRRSGDGIHVG
LLHGSLKGNPEWEMRKKDIPFSVADLVALDLDYIALGHYHDAACLEEGGRVIACYPGSPEGKKFGENGPRYALIVEVAPG
NASVERVEVQTRIIREFNVDASLFAEPAALEAELARLGTSDTVGRIRLCGTVEEPLDTANLSGRVKGNFAWLELVDETDL
YNSGHVKRMEREDSIRGLFIRKIHERYDAAGSDAERELCRDALRLVMGRFSRGGGN
>Mature_375_residues
PIRFLHTADLHLDSPLRTFGDLARERRRDFLKTFDRIVNLAIKREVDCILIAGDLFDSTSVGAETVGRVQDAFSRLAGRG
VQVVLIPGTHDNIISAESVYSRYQFTGVHILREPAVDEPLRLDIRGEAVFFYGFAYRSDRSREALESMRRRSGDGIHVGL
LHGSLKGNPEWEMRKKDIPFSVADLVALDLDYIALGHYHDAACLEEGGRVIACYPGSPEGKKFGENGPRYALIVEVAPGN
ASVERVEVQTRIIREFNVDASLFAEPAALEAELARLGTSDTVGRIRLCGTVEEPLDTANLSGRVKGNFAWLELVDETDLY
NSGHVKRMEREDSIRGLFIRKIHERYDAAGSDAERELCRDALRLVMGRFSRGGGN

Specific function: Unknown

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallophosphoesterase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR014576 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: NA

Molecular weight: Translated: 41919; Mature: 41788

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRFLHTADLHLDSPLRTFGDLARERRRDFLKTFDRIVNLAIKREVDCILIAGDLFDST
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
SVGAETVGRVQDAFSRLAGRGVQVVLIPGTHDNIISAESVYSRYQFTGVHILREPAVDEP
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC
LRLDIRGEAVFFYGFAYRSDRSREALESMRRRSGDGIHVGLLHGSLKGNPEWEMRKKDIP
EEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
FSVADLVALDLDYIALGHYHDAACLEEGGRVIACYPGSPEGKKFGENGPRYALIVEVAPG
CHHHHHHHHHHHHEEECCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCC
NASVERVEVQTRIIREFNVDASLFAEPAALEAELARLGTSDTVGRIRLCGTVEEPLDTAN
CCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
LSGRVKGNFAWLELVDETDLYNSGHVKRMEREDSIRGLFIRKIHERYDAAGSDAERELCR
CCCEEECCEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
DALRLVMGRFSRGGGN
HHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PIRFLHTADLHLDSPLRTFGDLARERRRDFLKTFDRIVNLAIKREVDCILIAGDLFDST
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
SVGAETVGRVQDAFSRLAGRGVQVVLIPGTHDNIISAESVYSRYQFTGVHILREPAVDEP
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC
LRLDIRGEAVFFYGFAYRSDRSREALESMRRRSGDGIHVGLLHGSLKGNPEWEMRKKDIP
EEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
FSVADLVALDLDYIALGHYHDAACLEEGGRVIACYPGSPEGKKFGENGPRYALIVEVAPG
CHHHHHHHHHHHHEEECCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCC
NASVERVEVQTRIIREFNVDASLFAEPAALEAELARLGTSDTVGRIRLCGTVEEPLDTAN
CCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
LSGRVKGNFAWLELVDETDLYNSGHVKRMEREDSIRGLFIRKIHERYDAAGSDAERELCR
CCCEEECCEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
DALRLVMGRFSRGGGN
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]