| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is atoS [C]
Identifier: 39996515
GI number: 39996515
Start: 1551250
End: 1553784
Strand: Direct
Name: atoS [C]
Synonym: GSU1414
Alternate gene names: 39996515
Gene position: 1551250-1553784 (Clockwise)
Preceding gene: 39996514
Following gene: 39996516
Centisome position: 40.67
GC content: 58.46
Gene sequence:
>2535_bases GTGGAGCTTTCCTTACGGGCACTCGTGGGCAGGAAGTGCTATTCCGTACGGGGGATGGGCGTTCCGTGCCGCAACTGCCC GGCGGCTATCGCCGTGGAGGCCGGCACGCCTTCTGACGCGGAGTTGATCCAGCCCCGTCCGGAACACTGCCCGGGACCGC CGGGGACGTGGCTGACAACGGCTTCGCCGCTACGGGATGACAACGGTGCCGTTGTCGGCGTAGTGGTGCTGACGTTTAAT GGAGTGCAGACCGGGGCTTCAGACGAGCGGCTGCGTCTGTTCACGGAGCATGCGCCTGCCGCCCTTGCCATGTTCGACCG GGAGATGCGGTATCTTGCCGTGAGCCGGCGCTGGCGCGAAGACTACGGTCTTGGAGACGGCGATATTCTCGGCATGTCTC ACTATGATATCTTCCCGGAAATCGGAGAAGAGTGGAAGTCCGTGCATCGCCGCGGCCTCGCGGGGGAAGTTATCCGCGTC GAAGAGGATTGCTTCGTGCGGGCTGACGGCCGAACTCAGTGGCTGCGATGGGAAGTGCGTCCCTGGTACGAGGGGGAAGG CCGAGTGGGGGGCGTCGTCATTTTTACCGAAGACATCACCAGAGCCAAGGTGTCCGAACGCGAATTGCGTCTGGCGCGGT TCTGCATGGACGAATCGGCCATTGCCATCTTTTCGGTGGCCGAGAATGGCCGCATTATCGATGCGAACCGTCGAGCCTGC GAGGGGCTCGGCTATTCACGGGACGAGCTCTGCTCCCTGACGGTCTTCGATATTGACCCGACGTTCAGCGATGATAGTTG GCTCAGGCACCGGGCGAACATCCGCGAGCGCGGCTCCGGTACCATAGAAACCCTCCACCGGCGCAAGGACGGTAGCGTTT TCCCGGTCGAGATCACTGTCACCTATCTCGATTTCGAAGGAGAACGGTTCTCTTTCTCCTTTGCCCATGACATCACCGAG CGTAAGCAGGCCGAGGCTGCCGTGCGGGAGAGCGAGGAAAAATTCCGGAACATTTTCCAGGATCATGCCGCGGCAAAGCT GATCATTGACCCAGAAAGCGGCGCCATCGTCGATGCCAACAATGCTGCAGCGCTCTTTTACGGCTGGTCTGTGGCCGAAC TGTGCGGCATGAAGATTTCCAAAATCAACACCCTTCCTTTCTCGCAGGTGAAAGAAGAGATGGACAAAGCCCGGAATTCC GGGAATACGCGGTTCGAATTCCAGCATCGAAAGGCTGACGGCAGCATTGTCGATGTCGAGGTCTACAGCAGCAAAGTCCG CATCGGAGGCAAGGAGTACCTGCATTCGATCATTCACGACATCACCGAAAAACGCAAGCTGGGAGACCAGCTCCGGCAGG CCCAGAAGATGGAGTCAATCGGTACCTTCGCGGGAGGTGTCGCTCACGATTTCAACAACATCCTTACGGTTATCACGGGG TGCGGTTCAATGCTGCGACTGAAGCTTGAGCAGCACCCCCAGTTCCTGCCCCTGCTCGATCAGATCCTCAAATCATCTGA AAAAGCGGCAACCTTGACGCGAAGCCTCCTGGCATTCAGCCGCAAACAGGTCATCGTACCGAAACAGCATGATTTGGCGG AAATTGTTGCGGATATGGAGAAATTCCTCCAACGGATCATCGGAGAAGATATCGATTTGAAATTCTCCCTGCCGAGCTAC GGATTGCCGGTTTCCGTGGACCAGGGCCAGATTGAGCAGGTCATCGTCAATCTGGCGGCCAACGCTCGCGATGCCATGAC GGAAGGTGGGATGCTGGCCATAGGCGCGGACATGGTGCGGCTCGACACGATTTCAGCGTCCCTCCACGGCTGCCGTCCGG GAGACTATGCCCTGCTTACCGTTACCGACAGTGGGATCGGCATGGATGACGCAACAAAGGAGAAAATTTTCGATCCCTTC TTCACAACCAAGCCGGTCGGCAAGGGGACGGGCCTCGGTCTGGCCATGGTTTACGGCATCATCAAGCAGCACGATGGGGT GATTACGGTTTATACCGAGGTGGGAAGGGGTACCACATTCCGGATTTATCTTCCCCTGGCAGCCGGTGCGCGGGAGCATG CCGATGCGACGCCGGTTTTCCCGGGGGGAAACGAAACCATTATGCTCGTGGAGGATGATGAATCCGTGCGAACCACCACG GCGGATATTCTGACAATGTTCGGCTACCGTGTTGTGACCGCGGGGGACGGGGCAGAGGCCATCGAACGGTATCGTGCGAC CGGAGAGGATATAGCCTTGGTGATTCTTGACGTCATCATGCCGCGGATGAATGGCCGCCAGGTCCATGACGAGCTCCTAA AGATCAACCCGGCTGTGAAGGTCGTCTATACGAGCGGCTACACTGCCGATCTGATCGAGAACAAAGGAGTTCTCGACGCC GGTATCCAATTCGTTCCCAAACCGCTCCTCCCCCAGGACATTCTCACGGCAATCCGTCGGGTGCTGGATGGCCGTGAGGT GCTGCCAAGCCTGCATCATGAGCATGAGCCGGCCGAGGTAGAACCTCAGTCGTAG
Upstream 100 bases:
>100_bases ACAGGCCCATATCGAGGCGTTTGAAGACCTTCCGGTGCAGGTCGCCGTGTGCGATACCGAGTACGGGATCGTCTGGGCGA ACAAGGCGTACCGGGAGGCC
Downstream 100 bases:
>100_bases TGCCCCGCGACCTGAGTTCTACGGAAACACTCTTCGATTGAACAAACAAAAAAACGAATTATAGTTAAGGTTGTGTCCCG TGCGGCCGGCACTAACCGTA
Product: sensory box histidine kinase/response regulator
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 844; Mature: 844
Protein sequence:
>844_residues MELSLRALVGRKCYSVRGMGVPCRNCPAAIAVEAGTPSDAELIQPRPEHCPGPPGTWLTTASPLRDDNGAVVGVVVLTFN GVQTGASDERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRV EEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDITRAKVSERELRLARFCMDESAIAIFSVAENGRIIDANRRAC EGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTIETLHRRKDGSVFPVEITVTYLDFEGERFSFSFAHDITE RKQAEAAVRESEEKFRNIFQDHAAAKLIIDPESGAIVDANNAAALFYGWSVAELCGMKISKINTLPFSQVKEEMDKARNS GNTRFEFQHRKADGSIVDVEVYSSKVRIGGKEYLHSIIHDITEKRKLGDQLRQAQKMESIGTFAGGVAHDFNNILTVITG CGSMLRLKLEQHPQFLPLLDQILKSSEKAATLTRSLLAFSRKQVIVPKQHDLAEIVADMEKFLQRIIGEDIDLKFSLPSY GLPVSVDQGQIEQVIVNLAANARDAMTEGGMLAIGADMVRLDTISASLHGCRPGDYALLTVTDSGIGMDDATKEKIFDPF FTTKPVGKGTGLGLAMVYGIIKQHDGVITVYTEVGRGTTFRIYLPLAAGAREHADATPVFPGGNETIMLVEDDESVRTTT ADILTMFGYRVVTAGDGAEAIERYRATGEDIALVILDVIMPRMNGRQVHDELLKINPAVKVVYTSGYTADLIENKGVLDA GIQFVPKPLLPQDILTAIRRVLDGREVLPSLHHEHEPAEVEPQS
Sequences:
>Translated_844_residues MELSLRALVGRKCYSVRGMGVPCRNCPAAIAVEAGTPSDAELIQPRPEHCPGPPGTWLTTASPLRDDNGAVVGVVVLTFN GVQTGASDERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRV EEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDITRAKVSERELRLARFCMDESAIAIFSVAENGRIIDANRRAC EGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTIETLHRRKDGSVFPVEITVTYLDFEGERFSFSFAHDITE RKQAEAAVRESEEKFRNIFQDHAAAKLIIDPESGAIVDANNAAALFYGWSVAELCGMKISKINTLPFSQVKEEMDKARNS GNTRFEFQHRKADGSIVDVEVYSSKVRIGGKEYLHSIIHDITEKRKLGDQLRQAQKMESIGTFAGGVAHDFNNILTVITG CGSMLRLKLEQHPQFLPLLDQILKSSEKAATLTRSLLAFSRKQVIVPKQHDLAEIVADMEKFLQRIIGEDIDLKFSLPSY GLPVSVDQGQIEQVIVNLAANARDAMTEGGMLAIGADMVRLDTISASLHGCRPGDYALLTVTDSGIGMDDATKEKIFDPF FTTKPVGKGTGLGLAMVYGIIKQHDGVITVYTEVGRGTTFRIYLPLAAGAREHADATPVFPGGNETIMLVEDDESVRTTT ADILTMFGYRVVTAGDGAEAIERYRATGEDIALVILDVIMPRMNGRQVHDELLKINPAVKVVYTSGYTADLIENKGVLDA GIQFVPKPLLPQDILTAIRRVLDGREVLPSLHHEHEPAEVEPQS >Mature_844_residues MELSLRALVGRKCYSVRGMGVPCRNCPAAIAVEAGTPSDAELIQPRPEHCPGPPGTWLTTASPLRDDNGAVVGVVVLTFN GVQTGASDERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRV EEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDITRAKVSERELRLARFCMDESAIAIFSVAENGRIIDANRRAC EGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTIETLHRRKDGSVFPVEITVTYLDFEGERFSFSFAHDITE RKQAEAAVRESEEKFRNIFQDHAAAKLIIDPESGAIVDANNAAALFYGWSVAELCGMKISKINTLPFSQVKEEMDKARNS GNTRFEFQHRKADGSIVDVEVYSSKVRIGGKEYLHSIIHDITEKRKLGDQLRQAQKMESIGTFAGGVAHDFNNILTVITG CGSMLRLKLEQHPQFLPLLDQILKSSEKAATLTRSLLAFSRKQVIVPKQHDLAEIVADMEKFLQRIIGEDIDLKFSLPSY GLPVSVDQGQIEQVIVNLAANARDAMTEGGMLAIGADMVRLDTISASLHGCRPGDYALLTVTDSGIGMDDATKEKIFDPF FTTKPVGKGTGLGLAMVYGIIKQHDGVITVYTEVGRGTTFRIYLPLAAGAREHADATPVFPGGNETIMLVEDDESVRTTT ADILTMFGYRVVTAGDGAEAIERYRATGEDIALVILDVIMPRMNGRQVHDELLKINPAVKVVYTSGYTADLIENKGVLDA GIQFVPKPLLPQDILTAIRRVLDGREVLPSLHHEHEPAEVEPQS
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=388, Percent_Identity=26.8041237113402, Blast_Score=119, Evalue=5e-28, Organism=Escherichia coli, GI48994928, Length=536, Percent_Identity=26.865671641791, Blast_Score=110, Evalue=4e-25, Organism=Escherichia coli, GI1790436, Length=247, Percent_Identity=27.9352226720648, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI87081816, Length=258, Percent_Identity=26.7441860465116, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1788713, Length=289, Percent_Identity=26.643598615917, Blast_Score=76, Evalue=1e-14, Organism=Escherichia coli, GI145693157, Length=387, Percent_Identity=23.2558139534884, Blast_Score=73, Evalue=1e-13, Organism=Escherichia coli, GI87081881, Length=135, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790300, Length=248, Percent_Identity=28.6290322580645, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786912, Length=249, Percent_Identity=28.1124497991968, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93426; Mature: 93426
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELSLRALVGRKCYSVRGMGVPCRNCPAAIAVEAGTPSDAELIQPRPEHCPGPPGTWLTT CCCCHHHHHCCHHHEECCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCCCEEC ASPLRDDNGAVVGVVVLTFNGVQTGASDERLRLFTEHAPAALAMFDREMRYLAVSRRWRE CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHH DYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRVEEDCFVRADGRTQWLRWEVR HCCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEEEEEC PWYEGEGRVGGVVIFTEDITRAKVSERELRLARFCMDESAIAIFSVAENGRIIDANRRAC CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCHHH EGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTIETLHRRKDGSVFPVEITV HCCCCCHHHHEEEEEEECCCCCCCCHHHHHHCCHHHCCCCHHHHHHHCCCCCEEEEEEEE TYLDFEGERFSFSFAHDITERKQAEAAVRESEEKFRNIFQDHAAAKLIIDPESGAIVDAN EEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECC NAAALFYGWSVAELCGMKISKINTLPFSQVKEEMDKARNSGNTRFEFQHRKADGSIVDVE CCEEEEECCCHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEE VYSSKVRIGGKEYLHSIIHDITEKRKLGDQLRQAQKMESIGTFAGGVAHDFNNILTVITG EECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC CGSMLRLKLEQHPQFLPLLDQILKSSEKAATLTRSLLAFSRKQVIVPKQHDLAEIVADME CCHHEEHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH KFLQRIIGEDIDLKFSLPSYGLPVSVDQGQIEQVIVNLAANARDAMTEGGMLAIGADMVR HHHHHHCCCCCEEEEECCCCCCEEECCCHHHHHHHHHHHCCCHHHHCCCCEEEECCCEEE LDTISASLHGCRPGDYALLTVTDSGIGMDDATKEKIFDPFFTTKPVGKGTGLGLAMVYGI EEEHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH IKQHDGVITVYTEVGRGTTFRIYLPLAAGAREHADATPVFPGGNETIMLVEDDESVRTTT HHHCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHH ADILTMFGYRVVTAGDGAEAIERYRATGEDIALVILDVIMPRMNGRQVHDELLKINPAVK HHHHHHHCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEE VVYTSGYTADLIENKGVLDAGIQFVPKPLLPQDILTAIRRVLDGREVLPSLHHEHEPAEV EEEECCCEEHHHCCCCCHHHCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCC EPQS CCCC >Mature Secondary Structure MELSLRALVGRKCYSVRGMGVPCRNCPAAIAVEAGTPSDAELIQPRPEHCPGPPGTWLTT CCCCHHHHHCCHHHEECCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCCCEEC ASPLRDDNGAVVGVVVLTFNGVQTGASDERLRLFTEHAPAALAMFDREMRYLAVSRRWRE CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHH DYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRVEEDCFVRADGRTQWLRWEVR HCCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEEEEEC PWYEGEGRVGGVVIFTEDITRAKVSERELRLARFCMDESAIAIFSVAENGRIIDANRRAC CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCHHH EGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTIETLHRRKDGSVFPVEITV HCCCCCHHHHEEEEEEECCCCCCCCHHHHHHCCHHHCCCCHHHHHHHCCCCCEEEEEEEE TYLDFEGERFSFSFAHDITERKQAEAAVRESEEKFRNIFQDHAAAKLIIDPESGAIVDAN EEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECC NAAALFYGWSVAELCGMKISKINTLPFSQVKEEMDKARNSGNTRFEFQHRKADGSIVDVE CCEEEEECCCHHHHHCCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEE VYSSKVRIGGKEYLHSIIHDITEKRKLGDQLRQAQKMESIGTFAGGVAHDFNNILTVITG EECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC CGSMLRLKLEQHPQFLPLLDQILKSSEKAATLTRSLLAFSRKQVIVPKQHDLAEIVADME CCHHEEHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH KFLQRIIGEDIDLKFSLPSYGLPVSVDQGQIEQVIVNLAANARDAMTEGGMLAIGADMVR HHHHHHCCCCCEEEEECCCCCCEEECCCHHHHHHHHHHHCCCHHHHCCCCEEEECCCEEE LDTISASLHGCRPGDYALLTVTDSGIGMDDATKEKIFDPFFTTKPVGKGTGLGLAMVYGI EEEHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH IKQHDGVITVYTEVGRGTTFRIYLPLAAGAREHADATPVFPGGNETIMLVEDDESVRTTT HHHCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHH ADILTMFGYRVVTAGDGAEAIERYRATGEDIALVILDVIMPRMNGRQVHDELLKINPAVK HHHHHHHCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEE VVYTSGYTADLIENKGVLDAGIQFVPKPLLPQDILTAIRRVLDGREVLPSLHHEHEPAEV EEEECCCEEHHHCCCCCHHHCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCC EPQS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA