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The map label for this gene is ygbT [H]

Identifier: 39996494

GI number: 39996494

Start: 1520569

End: 1521489

Strand: Direct

Name: ygbT [H]

Synonym: GSU1392

Alternate gene names: 39996494

Gene position: 1520569-1521489 (Clockwise)

Preceding gene: 39996493

Following gene: 39996495

Centisome position: 39.87

GC content: 63.41

Gene sequence:

>921_bases
ATGCAGCCACAGCTTCCTCCCCTTAAACCCATCCCGATAAAAGATCGCATCTCGGTTCTCTATGTGGAAAGGGGGAACCT
CGATGTGCTTGACGGCGCCTTCGTGGTGGTGGACAAGACCGGCGTCCGCACCCATCTCCCCGTTGGCGGGGTGGCGTGTC
TCATGCTGGAGCCGGGCACACGGGTATCCCATGCAGCGGTGACGCTCGCCTCCCGGATCGGCTGCCTCCTCGTCTGGATC
GGCGAGGCCGGGGTCAGGCTCTACGCCTCGGGCCAGCCGGGCGGGGCGCGGGCCGACCGGCTCCTCTATCAGGCGAAACT
GGCCCTGGACGATTCGGCTCGGTTGAAAGTTGTGCGCAAGATGTACGCCCTCCGCTTCAGGGAAGAACCTCCCGAGCGGC
GGAGCGTGGAACAACTGCGCGGCATTGAGGGGGTGAGGGTTCGTAAGATGTATGAGCTTCTCGCCCGCCAGCACGGTGTT
GCGTGGAAGGCCCGCAACTACGACCACACTCAGTGGGAAAGCGGCGATGTGCCGAACCGCTGTCTGTCATCGGCCACCGC
CTGTCTCTACGGTATCTGCGAGGCGGCGATCCTGGCGGCGGGCTATGCGCCGGCGGTCGGTTTCATCCATACCGGCAAGC
CCCAATCGTTCGTCTACGACATCGCCGACATCTTCAAGTTCGAAACCGTGGTGCCGGTGGCCTTCCGGATCGCCGCCAAA
AAGCCCCGCGACCCGGAGCGGGAAGTGCGGCTCGCCTGTCGCGATGCCTTCCGTCAGTCAAAGATTCTGCATCGCATCAT
ACCTACCATTGAGCAAGTGCTAGCAGCCGGTGGCATGGATGTGCCCACGCCGCCGCCCGAGTCGGTCGAAGCCGTAATTC
CGAACAAGGAGGGGATCGGAGATGCTGGTCATCGTGGTTGA

Upstream 100 bases:

>100_bases
CTACTATATCGAAGCGCTTCGCGCCGCCGACCGGCATGATTATCAACTTCTGCTGGAATTTGTGCGGATGTGATCCTGAT
TTGCCAAGGAGGTGTCAGCA

Downstream 100 bases:

>100_bases
GAATGCGCCTCCGAGGCTGCGCGGCCGGCTGGCTCTCTGGCTGCTTGAAGTGCGGGCCGGAGTCTACGTGGGCAAAGTCT
CGCGTCGGGTGCGGGAGATG

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MQPQLPPLKPIPIKDRISVLYVERGNLDVLDGAFVVVDKTGVRTHLPVGGVACLMLEPGTRVSHAAVTLASRIGCLLVWI
GEAGVRLYASGQPGGARADRLLYQAKLALDDSARLKVVRKMYALRFREEPPERRSVEQLRGIEGVRVRKMYELLARQHGV
AWKARNYDHTQWESGDVPNRCLSSATACLYGICEAAILAAGYAPAVGFIHTGKPQSFVYDIADIFKFETVVPVAFRIAAK
KPRDPEREVRLACRDAFRQSKILHRIIPTIEQVLAAGGMDVPTPPPESVEAVIPNKEGIGDAGHRG

Sequences:

>Translated_306_residues
MQPQLPPLKPIPIKDRISVLYVERGNLDVLDGAFVVVDKTGVRTHLPVGGVACLMLEPGTRVSHAAVTLASRIGCLLVWI
GEAGVRLYASGQPGGARADRLLYQAKLALDDSARLKVVRKMYALRFREEPPERRSVEQLRGIEGVRVRKMYELLARQHGV
AWKARNYDHTQWESGDVPNRCLSSATACLYGICEAAILAAGYAPAVGFIHTGKPQSFVYDIADIFKFETVVPVAFRIAAK
KPRDPEREVRLACRDAFRQSKILHRIIPTIEQVLAAGGMDVPTPPPESVEAVIPNKEGIGDAGHRG
>Mature_306_residues
MQPQLPPLKPIPIKDRISVLYVERGNLDVLDGAFVVVDKTGVRTHLPVGGVACLMLEPGTRVSHAAVTLASRIGCLLVWI
GEAGVRLYASGQPGGARADRLLYQAKLALDDSARLKVVRKMYALRFREEPPERRSVEQLRGIEGVRVRKMYELLARQHGV
AWKARNYDHTQWESGDVPNRCLSSATACLYGICEAAILAAGYAPAVGFIHTGKPQSFVYDIADIFKFETVVPVAFRIAAK
KPRDPEREVRLACRDAFRQSKILHRIIPTIEQVLAAGGMDVPTPPPESVEAVIPNKEGIGDAGHRG

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=299, Percent_Identity=67.8929765886288, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 33572; Mature: 33572

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPQLPPLKPIPIKDRISVLYVERGNLDVLDGAFVVVDKTGVRTHLPVGGVACLMLEPGT
CCCCCCCCCCCCCCCCEEEEEEECCCEEEECCEEEEEECCCCEEECCCCCEEEEEECCCC
RVSHAAVTLASRIGCLLVWIGEAGVRLYASGQPGGARADRLLYQAKLALDDSARLKVVRK
CHHHHHHHHHHHHCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
MYALRFREEPPERRSVEQLRGIEGVRVRKMYELLARQHGVAWKARNYDHTQWESGDVPNR
HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHH
CLSSATACLYGICEAAILAAGYAPAVGFIHTGKPQSFVYDIADIFKFETVVPVAFRIAAK
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
KPRDPEREVRLACRDAFRQSKILHRIIPTIEQVLAAGGMDVPTPPPESVEAVIPNKEGIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
DAGHRG
CCCCCC
>Mature Secondary Structure
MQPQLPPLKPIPIKDRISVLYVERGNLDVLDGAFVVVDKTGVRTHLPVGGVACLMLEPGT
CCCCCCCCCCCCCCCCEEEEEEECCCEEEECCEEEEEECCCCEEECCCCCEEEEEECCCC
RVSHAAVTLASRIGCLLVWIGEAGVRLYASGQPGGARADRLLYQAKLALDDSARLKVVRK
CHHHHHHHHHHHHCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
MYALRFREEPPERRSVEQLRGIEGVRVRKMYELLARQHGVAWKARNYDHTQWESGDVPNR
HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHH
CLSSATACLYGICEAAILAAGYAPAVGFIHTGKPQSFVYDIADIFKFETVVPVAFRIAAK
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
KPRDPEREVRLACRDAFRQSKILHRIIPTIEQVLAAGGMDVPTPPPESVEAVIPNKEGIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCC
DAGHRG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]