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The map label for this gene is rbpE [H]

Identifier: 39996426

GI number: 39996426

Start: 1449605

End: 1449928

Strand: Reverse

Name: rbpE [H]

Synonym: GSU1324

Alternate gene names: 39996426

Gene position: 1449928-1449605 (Counterclockwise)

Preceding gene: 39996427

Following gene: 39996418

Centisome position: 38.01

GC content: 65.12

Gene sequence:

>324_bases
ATGGCCAAAGAGCTCTATGTGGGGCATATGTCGTACGAGGCAACGGAGGACGATCTGCGGCGGCTGTTTTCGGTGGCCGG
CACGGTGACATCGGTCCACATCATCACCGATCCCGAAACGGGCAGGTCCAAGGGGTGCGGTTACGTGAGGATGCTCACCG
AGGAGGAGGCGAAAGAGGCGATCGAGACCCTTGACGGGGCACTGCTCAGGAACCGGGTGATCACCGTGAGCGTGGCGCGC
CCCCAGAAGCAGGCCACCCGTCCCGCTCCTCGCCGCGGGAAGCCCGGACCGGGCGGCAGACCGGGGAAAAAACGGCCGTC
GTAA

Upstream 100 bases:

>100_bases
CACCTGCAGGCTGTTGAAAAGCTATTGTGGGGCGGCAGCTTCAGCCTGCGGAGCGGCCATGCAGGATCAGGCACTCCAAT
GACACACGAAAGGGTTGACC

Downstream 100 bases:

>100_bases
TCCTGCATTATCAACATTTCCACCGCCGGTCACCTACTGGGACTGGGTACTCTCGCGGAGAAAACAGTCCCGCAAAAAAC
AGGGTGCCAGTGCGGCAGGA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVAR
PQKQATRPAPRRGKPGPGGRPGKKRPS

Sequences:

>Translated_107_residues
MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVAR
PQKQATRPAPRRGKPGPGGRPGKKRPS
>Mature_106_residues
AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARP
QKQATRPAPRRGKPGPGGRPGKKRPS

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI38201714, Length=85, Percent_Identity=40, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=37.6623376623377, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19920866, Length=72, Percent_Identity=41.6666666666667, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582412, Length=72, Percent_Identity=41.6666666666667, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582417, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550943, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582419, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582423, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582421, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330652, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62471589, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19549692, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19549690, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330653, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19549688, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19549694, Length=85, Percent_Identity=37.6470588235294, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11705; Mature: 11573

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEA
CCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECHHHHHHH
IETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRPGKKRPS
HHHHHHHHHHCEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEA
CCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECHHHHHHH
IETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRPGKKRPS
HHHHHHHHHHCEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]