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The map label for this gene is ydjX [C]

Identifier: 39996416

GI number: 39996416

Start: 1439851

End: 1440531

Strand: Reverse

Name: ydjX [C]

Synonym: GSU1314

Alternate gene names: 39996416

Gene position: 1440531-1439851 (Counterclockwise)

Preceding gene: 39996417

Following gene: 39996415

Centisome position: 37.77

GC content: 62.85

Gene sequence:

>681_bases
ATGAACGCACAACGAATTATCGTCATCTCCTTCTGTGTCGCACTGGTCGCCCTGTTCTTCATCCTGGACCTGGGACGGCT
GCTGACCTTTGCCTCGCTCAAAGCCAATCATGGGGCACTGCTGGCCTTTTACGGGGAACACCGCACCCTGACGGTTGCCG
TTTTCCTGGCGATCTACATCATCCAGACCGCCCTGTCGCTGCCGGGGGCCACGATCCTTTCCCTTGCCGCCGGCGCCCTG
TTCGGGGCCGTGGCAGGGACTGCCTGGGCGGTGACCGGCGCCACCATCGGGGCGACGCTGGCCTTCCTGCTTACCCGTTA
CCTCTTTCACGATGCGGTCCAGCGTCGCTTCGGCCCCAGGCTGGAGGGGATCAACCGGGAACTGGAAAAGGCCGGACTCA
ACTATCTGCTCTTTCTGCGGCTCGTCCCCCTGTTTCCCTTCTTCCTGATCAACCTGGGGGCGGGTCTGACGCGGCTTCCC
CTGCGCACTTTCGTGCTCGGGACCTTCGTGGGGATCATCCCGGGCGGTTTCGTCTACGTCAATGCCGGCGCCAGTCTGGC
CGCCATCGCGAGCCCCGCGGACATCGCCTCGCCGCGGGTGATCGGTTCCTTTGCCCTGCTGGGGCTCTTTTCGCTGGTGC
CGGTTCTGTACAAGAAAATTACCGCTCAAAGGAGAACCTGA

Upstream 100 bases:

>100_bases
CTGTGGCGCTAGCCATGAACTACGTGCGAATCATGGAAAATATGAATATATTCCTATAGCCGATTGCCTCCGCTCCCGGC
CTGGTATATAACCATCGTTC

Downstream 100 bases:

>100_bases
TGGACTCGTACTATGTACCCGACGATCTGGCGAAGTTCGGCGACATCGGCAAGGATGCGCCGGACTTGGCCAAGAAGTTC
TTTGATTACTACGGCGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNAQRIIVISFCVALVALFFILDLGRLLTFASLKANHGALLAFYGEHRTLTVAVFLAIYIIQTALSLPGATILSLAAGAL
FGAVAGTAWAVTGATIGATLAFLLTRYLFHDAVQRRFGPRLEGINRELEKAGLNYLLFLRLVPLFPFFLINLGAGLTRLP
LRTFVLGTFVGIIPGGFVYVNAGASLAAIASPADIASPRVIGSFALLGLFSLVPVLYKKITAQRRT

Sequences:

>Translated_226_residues
MNAQRIIVISFCVALVALFFILDLGRLLTFASLKANHGALLAFYGEHRTLTVAVFLAIYIIQTALSLPGATILSLAAGAL
FGAVAGTAWAVTGATIGATLAFLLTRYLFHDAVQRRFGPRLEGINRELEKAGLNYLLFLRLVPLFPFFLINLGAGLTRLP
LRTFVLGTFVGIIPGGFVYVNAGASLAAIASPADIASPRVIGSFALLGLFSLVPVLYKKITAQRRT
>Mature_226_residues
MNAQRIIVISFCVALVALFFILDLGRLLTFASLKANHGALLAFYGEHRTLTVAVFLAIYIIQTALSLPGATILSLAAGAL
FGAVAGTAWAVTGATIGATLAFLLTRYLFHDAVQRRFGPRLEGINRELEKAGLNYLLFLRLVPLFPFFLINLGAGLTRLP
LRTFVLGTFVGIIPGGFVYVNAGASLAAIASPADIASPRVIGSFALLGLFSLVPVLYKKITAQRRT

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=191, Percent_Identity=25.130890052356, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI18087813, Length=208, Percent_Identity=27.4038461538462, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87081964, Length=137, Percent_Identity=31.3868613138686, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17532687, Length=186, Percent_Identity=26.8817204301075, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115533785, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115533280, Length=181, Percent_Identity=27.0718232044199, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859941, Length=171, Percent_Identity=25.7309941520468, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24138; Mature: 24138

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAQRIIVISFCVALVALFFILDLGRLLTFASLKANHGALLAFYGEHRTLTVAVFLAIYI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH
IQTALSLPGATILSLAAGALFGAVAGTAWAVTGATIGATLAFLLTRYLFHDAVQRRFGPR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LEGINRELEKAGLNYLLFLRLVPLFPFFLINLGAGLTRLPLRTFVLGTFVGIIPGGFVYV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEE
NAGASLAAIASPADIASPRVIGSFALLGLFSLVPVLYKKITAQRRT
ECCCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAQRIIVISFCVALVALFFILDLGRLLTFASLKANHGALLAFYGEHRTLTVAVFLAIYI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH
IQTALSLPGATILSLAAGALFGAVAGTAWAVTGATIGATLAFLLTRYLFHDAVQRRFGPR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LEGINRELEKAGLNYLLFLRLVPLFPFFLINLGAGLTRLPLRTFVLGTFVGIIPGGFVYV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEE
NAGASLAAIASPADIASPRVIGSFALLGLFSLVPVLYKKITAQRRT
ECCCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]