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The map label for this gene is yjbQ [C]

Identifier: 39996158

GI number: 39996158

Start: 1142837

End: 1143238

Strand: Reverse

Name: yjbQ [C]

Synonym: GSU1056

Alternate gene names: 39996158

Gene position: 1143238-1142837 (Counterclockwise)

Preceding gene: 39996159

Following gene: 39996157

Centisome position: 29.97

GC content: 59.7

Gene sequence:

>402_bases
ATGATCAGGCACCTGGAATTCAAGAGCAGAACGCGAACCGACATGATCGACATCACGTCCGCGGTGCAGGAGCAGGTGCG
GTCCGCCGCCGTCCGGAACGGCGTGTGCCACTTGTTCGTGCTTCACACCACGGCGGGAATCACCATCAACGAGGGGGCCG
ACCCGGCTGTTCAGCGCGACATGGTCAACTTTCTCGATCGGCTTGTCCCCATCGATCCGTACTTCACCCACGCGGAAGGA
AATTCGGACGCACACATCAAATCAACCCTCACGGGAACCTCGCTGACAGTCTTCATTGTGGAGGGGAAATTGCTGCTCGG
CAGCTGGCAGTCGATCTACCTCTGTGAATTCGACGGACCGCGTCATCGACGGGTGGCCGTCAAGGTGGTACCCGACCCCT
GA

Upstream 100 bases:

>100_bases
CTTTCTTGCCCGAGAACACCCCGTTAACAAATATCTCGGCATTATGCTGAAAAAGTTGAAGATAAGATGAGCCCGCCGGG
CGATTGGGAGGAGGGACGTG

Downstream 100 bases:

>100_bases
CGCAACGGCGATGAAATCAGGGGGTCCGTCACTCAAGTTTCCTGCCGAATTGCCGATAAAGATACTAATGAAAGCATGCC
TACCCGATAGTGCCCGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIRHLEFKSRTRTDMIDITSAVQEQVRSAAVRNGVCHLFVLHTTAGITINEGADPAVQRDMVNFLDRLVPIDPYFTHAEG
NSDAHIKSTLTGTSLTVFIVEGKLLLGSWQSIYLCEFDGPRHRRVAVKVVPDP

Sequences:

>Translated_133_residues
MIRHLEFKSRTRTDMIDITSAVQEQVRSAAVRNGVCHLFVLHTTAGITINEGADPAVQRDMVNFLDRLVPIDPYFTHAEG
NSDAHIKSTLTGTSLTVFIVEGKLLLGSWQSIYLCEFDGPRHRRVAVKVVPDP
>Mature_133_residues
MIRHLEFKSRTRTDMIDITSAVQEQVRSAAVRNGVCHLFVLHTTAGITINEGADPAVQRDMVNFLDRLVPIDPYFTHAEG
NSDAHIKSTLTGTSLTVFIVEGKLLLGSWQSIYLCEFDGPRHRRVAVKVVPDP

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=86, Percent_Identity=43.0232558139535, Blast_Score=74, Evalue=4e-15,
Organism=Drosophila melanogaster, GI221476594, Length=86, Percent_Identity=46.5116279069767, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI221476589, Length=86, Percent_Identity=46.5116279069767, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 14829; Mature: 14829

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRHLEFKSRTRTDMIDITSAVQEQVRSAAVRNGVCHLFVLHTTAGITINEGADPAVQRD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEECCCCHHHHHH
MVNFLDRLVPIDPYFTHAEGNSDAHIKSTLTGTSLTVFIVEGKLLLGSWQSIYLCEFDGP
HHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCEEEEEEEECEEEEECCCEEEEEECCCC
RHRRVAVKVVPDP
CCEEEEEEEECCC
>Mature Secondary Structure
MIRHLEFKSRTRTDMIDITSAVQEQVRSAAVRNGVCHLFVLHTTAGITINEGADPAVQRD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEECCCCHHHHHH
MVNFLDRLVPIDPYFTHAEGNSDAHIKSTLTGTSLTVFIVEGKLLLGSWQSIYLCEFDGP
HHHHHHHHCCCCCCEEECCCCCCCEEEEEECCCEEEEEEEECEEEEECCCEEEEEECCCC
RHRRVAVKVVPDP
CCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]