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The map label for this gene is bphB [H]

Identifier: 39996138

GI number: 39996138

Start: 1119359

End: 1121098

Strand: Reverse

Name: bphB [H]

Synonym: GSU1036

Alternate gene names: 39996138

Gene position: 1121098-1119359 (Counterclockwise)

Preceding gene: 39996142

Following gene: 39996131

Centisome position: 29.39

GC content: 62.76

Gene sequence:

>1740_bases
ATGATTCAGGATGATCACTGTAAAGGCGGCACGAGATCTGCATTAAGAGGGAATCTCCTCGGACAGGCCATTGTGGTGGC
GGTGATGGTCTTTGGCGTATGCGCGACCATCGTCACCCTGATGGAACAGCGCTATCACCAGGAACAGCGGCACATCGTCG
CCGAAGTGGCCGCCGGCGCCGCCCACTCCCTTGACCGGCAACTTTCCCGCTCCCTTTCTCCCACCTACGTCCTGGCCTCC
ATTCTCCGGGCCTACGGCTCCATCAAGAATTTCGACAGGCTGGCCGTCGACATGATGGAGCAGTACGGCGGCATCAGCGC
GCTGGACCTTGCCCCCCAAGGTGTTGTCTCGGCCGTCTATCCTCTGGCGGGCAATGAGAAGGCCATCGGGTTCAACCTGC
TGAACGACCCGACACAGCGGACAGAAGCCCTGCACGCCATCAGCAGCCGCTCGCTCACCCTGGCCGGCCCCCTGGAGCTC
AGACAGGGGGGAACGGCCCTGGTGGGACGGCTGCCGGTGTTCCTGGAAACGGGAGGGGGACCGGAGCGCTTCTGGGGGTT
CGTCATTGCGGTCCTGCGTCTCGAAGATTTTCTCCCGGCAACCAACCTGGGCAGCCTGACCCAAAGCGGTTACGATTATG
AAATCTTCCGAGCCCACCCCGAAACGGGAAAACGTCAGAGTATTGCCCGCTCCACAGCCATCCCCCTCCCTAAACCCGTC
ACCCATGTGATCGAGGTGCCCAACGGTCAATGGATCCTGGCGGTGGCGCCCCAGGGAGGGTGGCGATGCTCTCCTCTCTA
TTTTGCCGGCTACGGGCTGGCTGTGGCGGTCTCGCTGCTGGTCGGGGCCCTGTTCTTTTCCACCCAGCGCCAACCGGCGC
TGCTGCGTCGCCTGGTGGCGGAAAGGACGAAGGAACTGGAGCGCACCAATCGGGAACTGACCTCGAAGGTTACCGAGCTG
GAACAGGCGCGTGCTGAAATCCGCACCTTGAACGACCAGTTGGAATTACGGGTTGCCGAGCGAACCGCACAGCTGGAGAG
CGCCAACCGGGAGCTGAGCTCCTTCAGCTACTCGGTTTCCCACGACCTGCGGGCTCCCCTCCGTCACATCGCCTCCTATG
CCCAGATCCTGCTCGATGAACAGGGTGACAAGCTCAATGGGGAAGGAGTGGGAATCCTTGGTCGGATTCATGCGGCTGGA
GTACGGATGGGGGAATTGATCGACGCGCTGCTCAATCTCTCCCGGATGTCCCGGGACGCCCTGCGCCGCAGACCAGTCGA
TCTGGCGGCACTGGCCGGCGAGATCCTCGACGAACTGAAAAACGCGGAGCCGGAGCGCCGCGTGGCGGTCACCCTCCCCG
ACCGGCTGGAGTGCTGCGCCGACCCGGACCTCATCAGGTCGGCGCTACGGAACCTGCTGGAAAATGCATGGAAGTACACG
GCCCTCAATCCAGCCGCAGCCATCGAGCTCGGCGTTACCCAGGATGCGGGTACTCCGGTCTATTACGTGAAGGATAACGG
GACGGGCTTCGACATGAGATATGCGGGCAAGCTGTTCGAGCCCTTCCAGCGGCTCCACGGCGAGGGGGAGTTCGGCGGCA
CCGGCGTCGGCCTTGCCACGGTGGACCGGATCATCCGTCGTCATGGGGGCAGAATCTGGGCCGAGGCGGAACTGGAAAAA
GGCTCCACCTTCTACTTCACGCTGGGCGGAGAGGAAGACAACCTTGCAGGGGGGAAATGA

Upstream 100 bases:

>100_bases
TTTTAGGTTATAATCAATGAGTATGATCTTACCTATACCTGCCGGGTCACAGGCAGGATTCAATTGAGCGGCAAACGGCA
CGGATGCGACAGGACCTTAC

Downstream 100 bases:

>100_bases
CAACGCCGGGGTAACCCGGCGTTGTCGACAGTACCTGCGAACGACCGCTACCCGGCGACCCTGAACCGGCCCACGGCGGC
ATGAAGCTCTTCGGCAAGAC

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MIQDDHCKGGTRSALRGNLLGQAIVVAVMVFGVCATIVTLMEQRYHQEQRHIVAEVAAGAAHSLDRQLSRSLSPTYVLAS
ILRAYGSIKNFDRLAVDMMEQYGGISALDLAPQGVVSAVYPLAGNEKAIGFNLLNDPTQRTEALHAISSRSLTLAGPLEL
RQGGTALVGRLPVFLETGGGPERFWGFVIAVLRLEDFLPATNLGSLTQSGYDYEIFRAHPETGKRQSIARSTAIPLPKPV
THVIEVPNGQWILAVAPQGGWRCSPLYFAGYGLAVAVSLLVGALFFSTQRQPALLRRLVAERTKELERTNRELTSKVTEL
EQARAEIRTLNDQLELRVAERTAQLESANRELSSFSYSVSHDLRAPLRHIASYAQILLDEQGDKLNGEGVGILGRIHAAG
VRMGELIDALLNLSRMSRDALRRRPVDLAALAGEILDELKNAEPERRVAVTLPDRLECCADPDLIRSALRNLLENAWKYT
ALNPAAAIELGVTQDAGTPVYYVKDNGTGFDMRYAGKLFEPFQRLHGEGEFGGTGVGLATVDRIIRRHGGRIWAEAELEK
GSTFYFTLGGEEDNLAGGK

Sequences:

>Translated_579_residues
MIQDDHCKGGTRSALRGNLLGQAIVVAVMVFGVCATIVTLMEQRYHQEQRHIVAEVAAGAAHSLDRQLSRSLSPTYVLAS
ILRAYGSIKNFDRLAVDMMEQYGGISALDLAPQGVVSAVYPLAGNEKAIGFNLLNDPTQRTEALHAISSRSLTLAGPLEL
RQGGTALVGRLPVFLETGGGPERFWGFVIAVLRLEDFLPATNLGSLTQSGYDYEIFRAHPETGKRQSIARSTAIPLPKPV
THVIEVPNGQWILAVAPQGGWRCSPLYFAGYGLAVAVSLLVGALFFSTQRQPALLRRLVAERTKELERTNRELTSKVTEL
EQARAEIRTLNDQLELRVAERTAQLESANRELSSFSYSVSHDLRAPLRHIASYAQILLDEQGDKLNGEGVGILGRIHAAG
VRMGELIDALLNLSRMSRDALRRRPVDLAALAGEILDELKNAEPERRVAVTLPDRLECCADPDLIRSALRNLLENAWKYT
ALNPAAAIELGVTQDAGTPVYYVKDNGTGFDMRYAGKLFEPFQRLHGEGEFGGTGVGLATVDRIIRRHGGRIWAEAELEK
GSTFYFTLGGEEDNLAGGK
>Mature_579_residues
MIQDDHCKGGTRSALRGNLLGQAIVVAVMVFGVCATIVTLMEQRYHQEQRHIVAEVAAGAAHSLDRQLSRSLSPTYVLAS
ILRAYGSIKNFDRLAVDMMEQYGGISALDLAPQGVVSAVYPLAGNEKAIGFNLLNDPTQRTEALHAISSRSLTLAGPLEL
RQGGTALVGRLPVFLETGGGPERFWGFVIAVLRLEDFLPATNLGSLTQSGYDYEIFRAHPETGKRQSIARSTAIPLPKPV
THVIEVPNGQWILAVAPQGGWRCSPLYFAGYGLAVAVSLLVGALFFSTQRQPALLRRLVAERTKELERTNRELTSKVTEL
EQARAEIRTLNDQLELRVAERTAQLESANRELSSFSYSVSHDLRAPLRHIASYAQILLDEQGDKLNGEGVGILGRIHAAG
VRMGELIDALLNLSRMSRDALRRRPVDLAALAGEILDELKNAEPERRVAVTLPDRLECCADPDLIRSALRNLLENAWKYT
ALNPAAAIELGVTQDAGTPVYYVKDNGTGFDMRYAGKLFEPFQRLHGEGEFGGTGVGLATVDRIIRRHGGRIWAEAELEK
GSTFYFTLGGEEDNLAGGK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=235, Percent_Identity=30.2127659574468, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081816, Length=289, Percent_Identity=28.0276816608997, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786783, Length=272, Percent_Identity=25, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1790551, Length=282, Percent_Identity=29.7872340425532, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1790346, Length=205, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789149, Length=275, Percent_Identity=25.4545454545455, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788549, Length=214, Percent_Identity=30.3738317757009, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI145693157, Length=247, Percent_Identity=26.7206477732794, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786912, Length=246, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1790861, Length=231, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786600, Length=237, Percent_Identity=25.7383966244726, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790436, Length=223, Percent_Identity=27.8026905829596, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788393, Length=219, Percent_Identity=30.1369863013699, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082128, Length=320, Percent_Identity=25.625, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789808, Length=197, Percent_Identity=27.4111675126904, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 63229; Mature: 63229

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50839 CHASE ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQDDHCKGGTRSALRGNLLGQAIVVAVMVFGVCATIVTLMEQRYHQEQRHIVAEVAAGA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHSLDRQLSRSLSPTYVLASILRAYGSIKNFDRLAVDMMEQYGGISALDLAPQGVVSAVY
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHH
PLAGNEKAIGFNLLNDPTQRTEALHAISSRSLTLAGPLELRQGGTALVGRLPVFLETGGG
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHHCCCCEEEECCCEEEECCCC
PERFWGFVIAVLRLEDFLPATNLGSLTQSGYDYEIFRAHPETGKRQSIARSTAIPLPKPV
HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCC
THVIEVPNGQWILAVAPQGGWRCSPLYFAGYGLAVAVSLLVGALFFSTQRQPALLRRLVA
HHEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ERTKELERTNRELTSKVTELEQARAEIRTLNDQLELRVAERTAQLESANRELSSFSYSVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLRAPLRHIASYAQILLDEQGDKLNGEGVGILGRIHAAGVRMGELIDALLNLSRMSRDA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHHH
LRRRPVDLAALAGEILDELKNAEPERRVAVTLPDRLECCADPDLIRSALRNLLENAWKYT
HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHCCC
ALNPAAAIELGVTQDAGTPVYYVKDNGTGFDMRYAGKLFEPFQRLHGEGEFGGTGVGLAT
CCCCHHEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
VDRIIRRHGGRIWAEAELEKGSTFYFTLGGEEDNLAGGK
HHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MIQDDHCKGGTRSALRGNLLGQAIVVAVMVFGVCATIVTLMEQRYHQEQRHIVAEVAAGA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHSLDRQLSRSLSPTYVLASILRAYGSIKNFDRLAVDMMEQYGGISALDLAPQGVVSAVY
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHH
PLAGNEKAIGFNLLNDPTQRTEALHAISSRSLTLAGPLELRQGGTALVGRLPVFLETGGG
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHHCCCCEEEECCCEEEECCCC
PERFWGFVIAVLRLEDFLPATNLGSLTQSGYDYEIFRAHPETGKRQSIARSTAIPLPKPV
HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCC
THVIEVPNGQWILAVAPQGGWRCSPLYFAGYGLAVAVSLLVGALFFSTQRQPALLRRLVA
HHEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ERTKELERTNRELTSKVTELEQARAEIRTLNDQLELRVAERTAQLESANRELSSFSYSVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLRAPLRHIASYAQILLDEQGDKLNGEGVGILGRIHAAGVRMGELIDALLNLSRMSRDA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHHH
LRRRPVDLAALAGEILDELKNAEPERRVAVTLPDRLECCADPDLIRSALRNLLENAWKYT
HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHCCC
ALNPAAAIELGVTQDAGTPVYYVKDNGTGFDMRYAGKLFEPFQRLHGEGEFGGTGVGLAT
CCCCHHEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
VDRIIRRHGGRIWAEAELEKGSTFYFTLGGEEDNLAGGK
HHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]