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The map label for this gene is scdA [H]

Identifier: 39995955

GI number: 39995955

Start: 908873

End: 909622

Strand: Direct

Name: scdA [H]

Synonym: GSU0849

Alternate gene names: 39995955

Gene position: 908873-909622 (Clockwise)

Preceding gene: 39995945

Following gene: 39995956

Centisome position: 23.83

GC content: 55.73

Gene sequence:

>750_bases
ATGAACGAGCCGAAGAATCCACGAGGGGAAGAAACAGCAGGCAAGACCATCGGCGAGTTTGTTGCCGAGGACTACCGGAC
GGCGGGCGTTTTCGAGAAATACGGGATTGACTTCTGCTGCGGCGGAAATAGTGCGCTTTCTGCCGCCTGCCGGCAAAAGG
GAATCGACCCGGCTCTGATCGTGCTGGAAATTGAGGCTGCGAAGACCGACCCCGTCGCACGGAGCGAGAACTTTGCGGCG
TGGGAACTTCCGTTTTTGGCAGACTATATCGTCGCTGTTCACCATGGGTACATCAAAGAGAATATCGGGCAGATTGTCTC
CCATACCCACAAGATTGCCGAGGTCCACGGCCCCCGGCATCCCGAGTTGGCCGAAATCGCCGCTATGTTCGAGAAGATTG
CAGCCGATCTGGCAGCCCATTTGCGCGAGGAGGAAGAAATCTTTTTTCCGGCCCTGAAGCGGGCCGACTCAGCAGGAAAG
GCAGGGAAGAAACCAGCGCAACAGGATGTCGACGCAATCAGGGGAGATTTGATAAGGCTGCGCCGGGAGCACGAGGAGGT
GGGCGATAGGGTTCACGCCATTCGCCATCTCGCCAGAGATTTTACGGTCCCCGGCGACGCTTGTAACACCTACGCGGTCA
CGTACAAGCAACTTAAGGAATTCGAGGATGATCTCCACAAGCATGTGCACCTCGAAAACAATATCCTTTTTCTGAAAGCA
GAAAGAGACCTGATCCCCTCGCTGGTATGA

Upstream 100 bases:

>100_bases
GGCCGATCGGCATTAACTGAGCGCTTCCGGCGGAAACTTGAACGTGCAGGGGAATGTGATAACGTTAAGTGCATTTCCCG
CCCGCTCGAAAGGAGGAACA

Downstream 100 bases:

>100_bases
GGGGTGCCTGGCGAACACGCAGCTCTGGGCCGGCCGGGGAGGTAGACTTAATCTTGTCTAAGGTGCGAGGGGATGCTCAT
GTCTGCAGCTGTGCCAGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNEPKNPRGEETAGKTIGEFVAEDYRTAGVFEKYGIDFCCGGNSALSAACRQKGIDPALIVLEIEAAKTDPVARSENFAA
WELPFLADYIVAVHHGYIKENIGQIVSHTHKIAEVHGPRHPELAEIAAMFEKIAADLAAHLREEEEIFFPALKRADSAGK
AGKKPAQQDVDAIRGDLIRLRREHEEVGDRVHAIRHLARDFTVPGDACNTYAVTYKQLKEFEDDLHKHVHLENNILFLKA
ERDLIPSLV

Sequences:

>Translated_249_residues
MNEPKNPRGEETAGKTIGEFVAEDYRTAGVFEKYGIDFCCGGNSALSAACRQKGIDPALIVLEIEAAKTDPVARSENFAA
WELPFLADYIVAVHHGYIKENIGQIVSHTHKIAEVHGPRHPELAEIAAMFEKIAADLAAHLREEEEIFFPALKRADSAGK
AGKKPAQQDVDAIRGDLIRLRREHEEVGDRVHAIRHLARDFTVPGDACNTYAVTYKQLKEFEDDLHKHVHLENNILFLKA
ERDLIPSLV
>Mature_249_residues
MNEPKNPRGEETAGKTIGEFVAEDYRTAGVFEKYGIDFCCGGNSALSAACRQKGIDPALIVLEIEAAKTDPVARSENFAA
WELPFLADYIVAVHHGYIKENIGQIVSHTHKIAEVHGPRHPELAEIAAMFEKIAADLAAHLREEEEIFFPALKRADSAGK
AGKKPAQQDVDAIRGDLIRLRREHEEVGDRVHAIRHLARDFTVPGDACNTYAVTYKQLKEFEDDLHKHVHLENNILFLKA
ERDLIPSLV

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=226, Percent_Identity=26.1061946902655, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 27738; Mature: 27738

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEPKNPRGEETAGKTIGEFVAEDYRTAGVFEKYGIDFCCGGNSALSAACRQKGIDPALI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCEEE
VLEIEAAKTDPVARSENFAAWELPFLADYIVAVHHGYIKENIGQIVSHTHKIAEVHGPRH
EEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PELAEIAAMFEKIAADLAAHLREEEEIFFPALKRADSAGKAGKKPAQQDVDAIRGDLIRL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
RREHEEVGDRVHAIRHLARDFTVPGDACNTYAVTYKQLKEFEDDLHKHVHLENNILFLKA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEE
ERDLIPSLV
CCCCCCCCC
>Mature Secondary Structure
MNEPKNPRGEETAGKTIGEFVAEDYRTAGVFEKYGIDFCCGGNSALSAACRQKGIDPALI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCEEE
VLEIEAAKTDPVARSENFAAWELPFLADYIVAVHHGYIKENIGQIVSHTHKIAEVHGPRH
EEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PELAEIAAMFEKIAADLAAHLREEEEIFFPALKRADSAGKAGKKPAQQDVDAIRGDLIRL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
RREHEEVGDRVHAIRHLARDFTVPGDACNTYAVTYKQLKEFEDDLHKHVHLENNILFLKA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEEE
ERDLIPSLV
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA