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The map label for this gene is yrbE [C]

Identifier: 39995923

GI number: 39995923

Start: 876513

End: 877286

Strand: Reverse

Name: yrbE [C]

Synonym: GSU0817

Alternate gene names: 39995923

Gene position: 877286-876513 (Counterclockwise)

Preceding gene: 39995924

Following gene: 39995922

Centisome position: 23.0

GC content: 59.95

Gene sequence:

>774_bases
TTGCTGGTATCATCCATTGAAAAGATCGGCGCCCTCACCCTCTTCGTGGTGAGGGAGATGGGGAAGATGCTCATCTTCCT
CACCTATGCCCTCGTCAACATCGTGATCAGGCCCGGCAAGCCGATCCACATCTACAAGCAGATCCACTTCATCGGCGCCA
AATCGCTCTTCGTCATCGTCCTGACCGCCGCCTTCACGGGGATGGTGCTGGGTCTCCAGGGGTACTACACCCTGGCAAAA
TTCGGCTCCGAGGGAATGCTCGGCTCGGCCGTGGCCCTCTCCCTCATCCGGGAGCTGGGGCCGGTCCTCTCGGCCCTCAT
GGTGGTTGGCCGGGCCGGCAGCGCCATTACCGCCGAGATCGGCATTAAAAAGATCACCGAACAGATCGATGCCCTGAAGA
CCATGGCCCTGGAGCCATTCAAGTATCTGGTTTCCCCCAAGATCCTGGCAGCTCTGATTGCACTGCCGCTTCTCTGCGCC
ATCTTCGACGTGGTCGGCATCTACGGCGGTTACGTGGTGGGGGTGAAACTGCTGGGAGTCAACCCGGGCGCCTACTTCTC
CGAGATGGAGCGGAGCGTGGAGTGGAAGGACGTCTGGTCCGGCATCGTGAAATCGTTTTCCTTCGGAGGCATCATCGCCT
GGGTCTGCTGCTACAAGGGATATCACGCCAGCCACGGCGCCGAGGGGGTTTCGCGGGCCACCACCGAGGCGGTGGTCATG
TCGTCGGTGCTGGTGCTCATCTGGGACTACTTCCTGACTTCAGTTATGTTATAG

Upstream 100 bases:

>100_bases
GCGTCACCCCCCGCAGGCCGTGATGAACGAGCTCTAATGCTTTACTTTGCGCGGTTTGTGCGTATACTGTGACCCGTCAA
CCTCACATCCGGAGCGTTCC

Downstream 100 bases:

>100_bases
GCCATGATCAGACTCGTTGACGTCCATAAATCATTCGGCAGCCAAGTGGTGCTCGACGGCCTCACCATGGAGATCCCTGA
AGGGAAGATCACCGCGGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLVSSIEKIGALTLFVVREMGKMLIFLTYALVNIVIRPGKPIHIYKQIHFIGAKSLFVIVLTAAFTGMVLGLQGYYTLAK
FGSEGMLGSAVALSLIRELGPVLSALMVVGRAGSAITAEIGIKKITEQIDALKTMALEPFKYLVSPKILAALIALPLLCA
IFDVVGIYGGYVVGVKLLGVNPGAYFSEMERSVEWKDVWSGIVKSFSFGGIIAWVCCYKGYHASHGAEGVSRATTEAVVM
SSVLVLIWDYFLTSVML

Sequences:

>Translated_257_residues
MLVSSIEKIGALTLFVVREMGKMLIFLTYALVNIVIRPGKPIHIYKQIHFIGAKSLFVIVLTAAFTGMVLGLQGYYTLAK
FGSEGMLGSAVALSLIRELGPVLSALMVVGRAGSAITAEIGIKKITEQIDALKTMALEPFKYLVSPKILAALIALPLLCA
IFDVVGIYGGYVVGVKLLGVNPGAYFSEMERSVEWKDVWSGIVKSFSFGGIIAWVCCYKGYHASHGAEGVSRATTEAVVM
SSVLVLIWDYFLTSVML
>Mature_257_residues
MLVSSIEKIGALTLFVVREMGKMLIFLTYALVNIVIRPGKPIHIYKQIHFIGAKSLFVIVLTAAFTGMVLGLQGYYTLAK
FGSEGMLGSAVALSLIRELGPVLSALMVVGRAGSAITAEIGIKKITEQIDALKTMALEPFKYLVSPKILAALIALPLLCA
IFDVVGIYGGYVVGVKLLGVNPGAYFSEMERSVEWKDVWSGIVKSFSFGGIIAWVCCYKGYHASHGAEGVSRATTEAVVM
SSVLVLIWDYFLTSVML

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=258, Percent_Identity=41.8604651162791, Blast_Score=201, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 27711; Mature: 27711

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSSIEKIGALTLFVVREMGKMLIFLTYALVNIVIRPGKPIHIYKQIHFIGAKSLFVIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
LTAAFTGMVLGLQGYYTLAKFGSEGMLGSAVALSLIRELGPVLSALMVVGRAGSAITAEI
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
GIKKITEQIDALKTMALEPFKYLVSPKILAALIALPLLCAIFDVVGIYGGYVVGVKLLGV
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEC
NPGAYFSEMERSVEWKDVWSGIVKSFSFGGIIAWVCCYKGYHASHGAEGVSRATTEAVVM
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SSVLVLIWDYFLTSVML
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA