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The map label for this gene is yrbD [C]

Identifier: 39995921

GI number: 39995921

Start: 875301

End: 875750

Strand: Reverse

Name: yrbD [C]

Synonym: GSU0815

Alternate gene names: 39995921

Gene position: 875750-875301 (Counterclockwise)

Preceding gene: 39995922

Following gene: 39995920

Centisome position: 22.96

GC content: 60.44

Gene sequence:

>450_bases
ATGAAAAGAGTCACTCTCGAATTGATAGTAGGCATATTTGTCCTGGTCGGCATCATCTGCCTTGCCTGGCTCTCCGTAAG
GCTGGGACAGATGGAGTTGCTGGGGGGGGACCACTATCAGGTCTCCGCGGATTTCGACTCGGTATCGGGCCTCAAAAAAG
GCGCCACCGTCGAAATAGCCGGGGTGGAGGTCGGTCGGGTCGACCGGATCGAGCTCGACTCCTCCAACGACCGGGCACGG
GTCTACCTGAGGATCAGGGACGGCGTCAAGCTCCAGGACGACGTGATCGCCTCGGTTCGGACCAGCGGCATCATCGGCGA
CAAATTCATCAAGCTCAAGCCGGGGGGGGCGGACAAGCTGCTGGCCGACGGCGGCCGCATCCGCGACACGGAATCGACCG
TGGACCTGGAAGAGCTCCTGAGCAAGTACATCCACGGGAACGTCGAATAA

Upstream 100 bases:

>100_bases
CACGTCGGAGGATATCCGGCGCTCGGAGCATCCGGTGGTGCGGCAGTTCATCAGCGGCAGCCTCGAAGGCCCCATTCAGT
TCATCTAAAAAGGTAGGCCC

Downstream 100 bases:

>100_bases
AACGGGACGCAGAATTCATCCGGACACCTGACGGAGGGACCAACCATGAAGGCACTCAGACGGACGGCTCTCGCACTGGC
CGTAACGCTCCTGCCGCTGG

Product: mce-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKRVTLELIVGIFVLVGIICLAWLSVRLGQMELLGGDHYQVSADFDSVSGLKKGATVEIAGVEVGRVDRIELDSSNDRAR
VYLRIRDGVKLQDDVIASVRTSGIIGDKFIKLKPGGADKLLADGGRIRDTESTVDLEELLSKYIHGNVE

Sequences:

>Translated_149_residues
MKRVTLELIVGIFVLVGIICLAWLSVRLGQMELLGGDHYQVSADFDSVSGLKKGATVEIAGVEVGRVDRIELDSSNDRAR
VYLRIRDGVKLQDDVIASVRTSGIIGDKFIKLKPGGADKLLADGGRIRDTESTVDLEELLSKYIHGNVE
>Mature_149_residues
MKRVTLELIVGIFVLVGIICLAWLSVRLGQMELLGGDHYQVSADFDSVSGLKKGATVEIAGVEVGRVDRIELDSSNDRAR
VYLRIRDGVKLQDDVIASVRTSGIIGDKFIKLKPGGADKLLADGGRIRDTESTVDLEELLSKYIHGNVE

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=158, Percent_Identity=34.1772151898734, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16238; Mature: 16238

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVTLELIVGIFVLVGIICLAWLSVRLGQMELLGGDHYQVSADFDSVSGLKKGATVEIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCHHHCCCCCCCEEEEE
GVEVGRVDRIELDSSNDRARVYLRIRDGVKLQDDVIASVRTSGIIGDKFIKLKPGGADKL
CCEECCEEEEEECCCCCCEEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCC
LADGGRIRDTESTVDLEELLSKYIHGNVE
CCCCCCCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRVTLELIVGIFVLVGIICLAWLSVRLGQMELLGGDHYQVSADFDSVSGLKKGATVEIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCHHHCCCCCCCEEEEE
GVEVGRVDRIELDSSNDRARVYLRIRDGVKLQDDVIASVRTSGIIGDKFIKLKPGGADKL
CCEECCEEEEEECCCCCCEEEEEEECCCCEEHHHHHHHHHHCCCCCCEEEEECCCCCCCC
LADGGRIRDTESTVDLEELLSKYIHGNVE
CCCCCCCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]