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The map label for this gene is hybB [H]

Identifier: 39995890

GI number: 39995890

Start: 844276

End: 845604

Strand: Direct

Name: hybB [H]

Synonym: GSU0784

Alternate gene names: 39995890

Gene position: 844276-845604 (Clockwise)

Preceding gene: 39995889

Following gene: 39995891

Centisome position: 22.14

GC content: 62.0

Gene sequence:

>1329_bases
ATGGGATCGCATCACGATGAATATCAGGTTCAGCCCGGCAAGATCTTAACCCGGCCCTTCTTCATCCTCCTGTTCTTCGT
CCTGGTAGGGCTGGCGCTCATCGCCTACCGGTTCTTCGCCGGCGTAGGCGCGGTTACCGGGCTGTCCGACGGCTACCCCT
GGGGAATCTGGATCGCCTACGACGTGGCCACCGGCACCGCCTTCGCCTGCGGCGGCTACGCACTGGCGCTGCTCATCTAC
ATCATGAACCGGTGGAAGTACCATCCGCTCATCCGCTCGGCCATCCTGACCAGCGTGTTCGGCTACTGCCTGGCCGGCTT
TTCGGTCATGGTCGACCTGGGCCGCTACTGGAACGCCTACGGCTTCTTCATGCCCAGCCGCTGGCAGGGCAACTCGGTCA
TGTTCGAGGTCGCTCTCTGCGTCATGTCGTACTCCACGGTCCTGATCATCGAGTTCCTCCCGGCGGTGCTCTACACCCTG
GAGCACAGCAAGTGGAAGTGGGTGCGCGAATCGTCCCACTGGCTCTATGCGCGCCTGATCCCCGACACCGACGCGCTCCG
CAACGGCCTGACCAACGTGAGCAAGGCGGCGGGGCATCTCCAGGTACGGCTCGACAAGGTCCTCATCTTCTTCATCGTCC
TGGGGATCACGCTGCCGTCCATGCACCAGTCGTCGCTCGGCTCCATGATGATCATTGCCGGCGAGAAGCTGAGCCCTCTG
TGGCAGACCGGCTTCCTGCCGCTGCTCTTCCTGATCAACTGCATCTTCATCGGCTACTCCACGGTCATGTTCGAGTCGAT
CCTCTCCTCCTTCGGCTTCAAGCGGGCCTATGAGGTGCACGAACTGTCCGGCATCGCCCGGATCGTGCCGTGGGTGGCAG
GGCTCTGGATGGCGATCCGCTTCGGCGACCTGATCTGGCGCAACCAGATCCCCACCATCCTGACGTTTGACAAGAACGCT
CTGTTCTTCCTCCTGGAGGTGCTCCTGATCGGTGGCGGCGCTTTCATGATGCTGTCGCGCAAGAACCGGCTCTCTCCGCG
GCTCCTGTTCCTGAGCGGTGCCCTGCTGATGCTCGGCGGCGGGCTCTACCGATTCAACGTCTACCTGATCGGCTTCAATC
CGGGCGAGGGGTGGAGCTACTTCCCCTCGGTGGCGGAATTCCTCATCACCGTGGGCATCATCGCCATCGAGATCCTCGGC
TACCTGACCCTGGTGAAGATTTTCCCGGTCATGCCGAATCCGAAGAAGCACTTCGCCGAAGAGGGCGAAGAGATGGTGGA
GGAAACTGCCGGCCAGGTCGCTCCCGGCGGCGTGTACGCAGGAAAATAA

Upstream 100 bases:

>100_bases
GGGTTCATCGCCCCGGTTGCCCTCTACGGGACCCTGGCGGCCATTGCCCTCAGGAACAAGAAGAAGCAGGAAGATCTCGG
ACACGGGGAGGACGATTAAG

Downstream 100 bases:

>100_bases
TGGGCGGTGGCCGGCGCCCGGGGAGCATCCCCGGCCGCCGGCCGACCCGCGGTCGAACGCATACAATTCATCTCTGGAGG
AATACATGTCTAAACGTATC

Product: hydrogenase 2 b cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MGSHHDEYQVQPGKILTRPFFILLFFVLVGLALIAYRFFAGVGAVTGLSDGYPWGIWIAYDVATGTAFACGGYALALLIY
IMNRWKYHPLIRSAILTSVFGYCLAGFSVMVDLGRYWNAYGFFMPSRWQGNSVMFEVALCVMSYSTVLIIEFLPAVLYTL
EHSKWKWVRESSHWLYARLIPDTDALRNGLTNVSKAAGHLQVRLDKVLIFFIVLGITLPSMHQSSLGSMMIIAGEKLSPL
WQTGFLPLLFLINCIFIGYSTVMFESILSSFGFKRAYEVHELSGIARIVPWVAGLWMAIRFGDLIWRNQIPTILTFDKNA
LFFLLEVLLIGGGAFMMLSRKNRLSPRLLFLSGALLMLGGGLYRFNVYLIGFNPGEGWSYFPSVAEFLITVGIIAIEILG
YLTLVKIFPVMPNPKKHFAEEGEEMVEETAGQVAPGGVYAGK

Sequences:

>Translated_442_residues
MGSHHDEYQVQPGKILTRPFFILLFFVLVGLALIAYRFFAGVGAVTGLSDGYPWGIWIAYDVATGTAFACGGYALALLIY
IMNRWKYHPLIRSAILTSVFGYCLAGFSVMVDLGRYWNAYGFFMPSRWQGNSVMFEVALCVMSYSTVLIIEFLPAVLYTL
EHSKWKWVRESSHWLYARLIPDTDALRNGLTNVSKAAGHLQVRLDKVLIFFIVLGITLPSMHQSSLGSMMIIAGEKLSPL
WQTGFLPLLFLINCIFIGYSTVMFESILSSFGFKRAYEVHELSGIARIVPWVAGLWMAIRFGDLIWRNQIPTILTFDKNA
LFFLLEVLLIGGGAFMMLSRKNRLSPRLLFLSGALLMLGGGLYRFNVYLIGFNPGEGWSYFPSVAEFLITVGIIAIEILG
YLTLVKIFPVMPNPKKHFAEEGEEMVEETAGQVAPGGVYAGK
>Mature_441_residues
GSHHDEYQVQPGKILTRPFFILLFFVLVGLALIAYRFFAGVGAVTGLSDGYPWGIWIAYDVATGTAFACGGYALALLIYI
MNRWKYHPLIRSAILTSVFGYCLAGFSVMVDLGRYWNAYGFFMPSRWQGNSVMFEVALCVMSYSTVLIIEFLPAVLYTLE
HSKWKWVRESSHWLYARLIPDTDALRNGLTNVSKAAGHLQVRLDKVLIFFIVLGITLPSMHQSSLGSMMIIAGEKLSPLW
QTGFLPLLFLINCIFIGYSTVMFESILSSFGFKRAYEVHELSGIARIVPWVAGLWMAIRFGDLIWRNQIPTILTFDKNAL
FFLLEVLLIGGGAFMMLSRKNRLSPRLLFLSGALLMLGGGLYRFNVYLIGFNPGEGWSYFPSVAEFLITVGIIAIEILGY
LTLVKIFPVMPNPKKHFAEEGEEMVEETAGQVAPGGVYAGK

Specific function: Probable b-type cytochrome [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=422, Percent_Identity=37.2037914691943, Blast_Score=267, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 49462; Mature: 49331

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSHHDEYQVQPGKILTRPFFILLFFVLVGLALIAYRFFAGVGAVTGLSDGYPWGIWIAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
DVATGTAFACGGYALALLIYIMNRWKYHPLIRSAILTSVFGYCLAGFSVMVDLGRYWNAY
EECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFFMPSRWQGNSVMFEVALCVMSYSTVLIIEFLPAVLYTLEHSKWKWVRESSHWLYARLI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCEEEEEEC
PDTDALRNGLTNVSKAAGHLQVRLDKVLIFFIVLGITLPSMHQSSLGSMMIIAGEKLSPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCHH
WQTGFLPLLFLINCIFIGYSTVMFESILSSFGFKRAYEVHELSGIARIVPWVAGLWMAIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGDLIWRNQIPTILTFDKNALFFLLEVLLIGGGAFMMLSRKNRLSPRLLFLSGALLMLGG
HHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
GLYRFNVYLIGFNPGEGWSYFPSVAEFLITVGIIAIEILGYLTLVKIFPVMPNPKKHFAE
CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
EGEEMVEETAGQVAPGGVYAGK
HHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GSHHDEYQVQPGKILTRPFFILLFFVLVGLALIAYRFFAGVGAVTGLSDGYPWGIWIAY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
DVATGTAFACGGYALALLIYIMNRWKYHPLIRSAILTSVFGYCLAGFSVMVDLGRYWNAY
EECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFFMPSRWQGNSVMFEVALCVMSYSTVLIIEFLPAVLYTLEHSKWKWVRESSHWLYARLI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCEEEEEEC
PDTDALRNGLTNVSKAAGHLQVRLDKVLIFFIVLGITLPSMHQSSLGSMMIIAGEKLSPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCHH
WQTGFLPLLFLINCIFIGYSTVMFESILSSFGFKRAYEVHELSGIARIVPWVAGLWMAIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGDLIWRNQIPTILTFDKNALFFLLEVLLIGGGAFMMLSRKNRLSPRLLFLSGALLMLGG
HHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
GLYRFNVYLIGFNPGEGWSYFPSVAEFLITVGIIAIEILGYLTLVKIFPVMPNPKKHFAE
CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
EGEEMVEETAGQVAPGGVYAGK
HHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8021226; 9278503 [H]