Click here to switch to the map view.

The map label for this gene is recD [C]

Identifier: 39995869

GI number: 39995869

Start: 815366

End: 818089

Strand: Reverse

Name: recD [C]

Synonym: GSU0763

Alternate gene names: 39995869

Gene position: 818089-815366 (Counterclockwise)

Preceding gene: 39995872

Following gene: 39995868

Centisome position: 21.45

GC content: 55.98

Gene sequence:

>2724_bases
ATGACTACGGTCAGCAGGCAGATCCAGAGCGCTGACGAGGCGATCTGTCGGAATATCGAATCGCTCGCTGACCAGCGGGC
ATTGCTCTCCCAAAATGTTCTCGCACAGCTCCGGAACCTAGTCGAGGGAGTTGCGGTCCGTCTCCACACGGGCTCACCCG
ATGCCGAATTCAACTACGCCGCAGTAGAACCGGCACTCGCCTTCGTCAAGAGTGAGGCAAGATTCAACTTCCTCGGCAAG
TTCCATAAACTGATTCAGAAAAGTGTGTCCCACTACACCCTGGACGGGGACGCTTCCGAGCGTTTGATGCTTAAGTACTA
CGAGTACCTCCACCGCGTCCGTAGCTTGCTTCAAGACAACTGTGGAGTTACGGTGCTGGCGAACCTCGAGGCCTTCCCGG
TCGACCTCGATCCGTCGCTGCAGGAGTACCAAGAAAAGATAGCAGCAAGAATTGAGGCAGTCCGTTCATCTCGACCAAGC
AGCAGCATCCGCGACAGGTATTACATCCACAAAACGCGCCCGTTTTTCGTCGGCGGGCGCATATACTACGAAGTCACCTT
CTACCGCGCCGTCGACAAGGTGAACAAGTTCGACCGTATCATTGCCTTCAGCTACATCGATATGACTGACAAGTACGCGG
CCATGTTGACGCTCCAGCGCGACTCAATCGAAGTGCTCGGCCAGACAATGCCGATCACAATCGTCCGCGAGTGGGAGGTC
TCTATCCGCCCGTGCGAATTTAAAAACTTCGCGCGCCTTCTGGGCATCACCTTAGACGTGCGGACCAGCTCGGTGGAGTA
TCGCTACCTGATGCGTGGGCTGACTAAGAGTTCCGTCAATCTGCTCGACCTGGTTGATATGCCCGACGATAAGTACACAC
AGGTAAGGACAGCAGGTACGGGTGACGCCACCAAATCACAGGTCTTTCCCGTACTGGATGAAGTGCGCCACATTGTGAGA
TCAGCCGCTCCGGGTCACAACGTACTCCGCTATCTCATGCTACGAATGCATAACCAGATCCTCAAGCCGCAGCACCTCCA
GGGCGGCTGTTACCTTCTCTCCGACATGAAACTTCAGTTCGGCTGCATCCCCTTTGACACCATGCCGTTCTGTACCTCGC
TACCGGGGCACAACCCCAGGTACTGGGACCTCGTCGAGAGCCTCGATGCAACCGATCGGAACCACGAACTGCTCGCTCGA
TGCGTGAGGAACAATGTGGAGCGTCACGGAATTCTCTACACGCCAGTTGTTGAGCTCGAGAAATTCGGAAACGTCAACGG
CTTGATCTCCACTTACAACAACAAGCTCTACTACAAGCATCCGGAGCGCCGGCTCGTGCTCGACAAGGGGCACGTCTTCA
TCTCCGGGTATGAGAACGACACAGTCTCCATCGTTGAGAAGCTCCAGGAGCATGCATCAGCCGGAATCGCCGGCTACACC
CAAGCCGTCGAGCGCTGGCTCGATGAGACATCTCGTAGCATTGACGACCAGGTGAAGAAGGATGCACTCAAACAGTTGTT
CAGCCAGTCGCGTGTCGCCCTGATCTACGGGGCGGCTGGCACTGGCAAGTCAACGATGGTGGACCACATCGCGCACTACT
TTAACGACAAAGCGAAACTCTTCCTCGCGCACACTCACCCAGCGATCGACAACCTCAAACGCAAGGTAACCGCGCAGAAC
TCGGCCTTCCGAACAATCAGCAGCCAGATCTCCAGGAGAACCACCGATCCGGTTTACGACCTCCTCATCATCGACGAGTG
CAGCACCGTGAGCAACGCAGACTTGATCAAGGTACTGGAGAAGACCTCCTTCAAGCTGCTCGTACTCGTCGGCGACGTCT
ACCAGATCGAGTCGATCGAGTTCGGCAACTGGTTCGGAATCATTCGTTCATTCATCCCGAGCACGTCGGTGTTCGAGCTG
ACGACGCCCTTCAGAACCAAGAATGACTCACTCTTGGGCTTCTGGAATAAGGTTCGAGCCATCGAAGACGACATCGCCGA
GGTCATGGCCCGCAACGGGTACTCGACCGCACTCGACAAGACGCTGTTTGAGACCCAAGGGCAGGACGAGATTATCCTGT
GCCTGAACTACGACGGCCTCTATGGTATCAACAACATCAATCGATTTCTGCAGAGCAGCAACCCCGGTACTGCGACCACT
TGGCGCGAGTCCACATATAAGATCGGTGACCCTGTCCTATTCCACGAGACCGAGCGGTTCCGCCCGGTGATCTATAACAA
CCTAAAGGGCTGGATCGTCGGCATCGCCCACGCCCCTGGTCGGATTCAATTCGACGTCAAGCTCGATCGACCGCTCAGCG
AGTTCGATGTCGAGTGTGATGAGCTCGAATGGGTGGTTGACTCGACAGTGCGCTTCTCCGTCTACGAGTACGATGACACC
AGCGATGAGGACGACGACTCACTGAACTCCAGTGTACCATTCCAAGTGGCCTATGCCGTATCGATCCACAAGGCGCAGGG
CCTCGAGTACGATTCCGTCAAGATCGTAATCACCGATGCCAATGAAGACGACATTACACACAGCATCTTCTACACAGCCG
TAACTCGTGCACGTGAGCGTCTGCGGATCTTCTGGACGCCCGAGACGCAACAGAGTGTTCTAAAGGGCCTCCGCCGTAGC
GCCAACCCAAAGGACGCCGCTCTTCTCGCTAGCCGTCGTGGCCTTATGCCGGTCAGTGGAGGGGTGAAGACTAGGGGGGC
GTAG

Upstream 100 bases:

>100_bases
AATATTCATTAGCCGCTTTAAGATGAGATAACAGCAGAATAGCCATGAGCAAGAAGGGGACACACATGACTTTCTTTAAT
CTAGCGGGAGTTGATAGTTA

Downstream 100 bases:

>100_bases
TTGATTTGTTGGGCAACTAGACAGAAAGTCAACAAATCAACTACTTCCTTTCAGGCGCCCCTGGGGGGATGAGCAGTTCA
CGCGTGCGCGTGAACTGCTC

Product: helicase

Products: Hydrolyzed double-stranded DNA [C]

Alternate protein names: NA

Number of amino acids: Translated: 907; Mature: 906

Protein sequence:

>907_residues
MTTVSRQIQSADEAICRNIESLADQRALLSQNVLAQLRNLVEGVAVRLHTGSPDAEFNYAAVEPALAFVKSEARFNFLGK
FHKLIQKSVSHYTLDGDASERLMLKYYEYLHRVRSLLQDNCGVTVLANLEAFPVDLDPSLQEYQEKIAARIEAVRSSRPS
SSIRDRYYIHKTRPFFVGGRIYYEVTFYRAVDKVNKFDRIIAFSYIDMTDKYAAMLTLQRDSIEVLGQTMPITIVREWEV
SIRPCEFKNFARLLGITLDVRTSSVEYRYLMRGLTKSSVNLLDLVDMPDDKYTQVRTAGTGDATKSQVFPVLDEVRHIVR
SAAPGHNVLRYLMLRMHNQILKPQHLQGGCYLLSDMKLQFGCIPFDTMPFCTSLPGHNPRYWDLVESLDATDRNHELLAR
CVRNNVERHGILYTPVVELEKFGNVNGLISTYNNKLYYKHPERRLVLDKGHVFISGYENDTVSIVEKLQEHASAGIAGYT
QAVERWLDETSRSIDDQVKKDALKQLFSQSRVALIYGAAGTGKSTMVDHIAHYFNDKAKLFLAHTHPAIDNLKRKVTAQN
SAFRTISSQISRRTTDPVYDLLIIDECSTVSNADLIKVLEKTSFKLLVLVGDVYQIESIEFGNWFGIIRSFIPSTSVFEL
TTPFRTKNDSLLGFWNKVRAIEDDIAEVMARNGYSTALDKTLFETQGQDEIILCLNYDGLYGINNINRFLQSSNPGTATT
WRESTYKIGDPVLFHETERFRPVIYNNLKGWIVGIAHAPGRIQFDVKLDRPLSEFDVECDELEWVVDSTVRFSVYEYDDT
SDEDDDSLNSSVPFQVAYAVSIHKAQGLEYDSVKIVITDANEDDITHSIFYTAVTRARERLRIFWTPETQQSVLKGLRRS
ANPKDAALLASRRGLMPVSGGVKTRGA

Sequences:

>Translated_907_residues
MTTVSRQIQSADEAICRNIESLADQRALLSQNVLAQLRNLVEGVAVRLHTGSPDAEFNYAAVEPALAFVKSEARFNFLGK
FHKLIQKSVSHYTLDGDASERLMLKYYEYLHRVRSLLQDNCGVTVLANLEAFPVDLDPSLQEYQEKIAARIEAVRSSRPS
SSIRDRYYIHKTRPFFVGGRIYYEVTFYRAVDKVNKFDRIIAFSYIDMTDKYAAMLTLQRDSIEVLGQTMPITIVREWEV
SIRPCEFKNFARLLGITLDVRTSSVEYRYLMRGLTKSSVNLLDLVDMPDDKYTQVRTAGTGDATKSQVFPVLDEVRHIVR
SAAPGHNVLRYLMLRMHNQILKPQHLQGGCYLLSDMKLQFGCIPFDTMPFCTSLPGHNPRYWDLVESLDATDRNHELLAR
CVRNNVERHGILYTPVVELEKFGNVNGLISTYNNKLYYKHPERRLVLDKGHVFISGYENDTVSIVEKLQEHASAGIAGYT
QAVERWLDETSRSIDDQVKKDALKQLFSQSRVALIYGAAGTGKSTMVDHIAHYFNDKAKLFLAHTHPAIDNLKRKVTAQN
SAFRTISSQISRRTTDPVYDLLIIDECSTVSNADLIKVLEKTSFKLLVLVGDVYQIESIEFGNWFGIIRSFIPSTSVFEL
TTPFRTKNDSLLGFWNKVRAIEDDIAEVMARNGYSTALDKTLFETQGQDEIILCLNYDGLYGINNINRFLQSSNPGTATT
WRESTYKIGDPVLFHETERFRPVIYNNLKGWIVGIAHAPGRIQFDVKLDRPLSEFDVECDELEWVVDSTVRFSVYEYDDT
SDEDDDSLNSSVPFQVAYAVSIHKAQGLEYDSVKIVITDANEDDITHSIFYTAVTRARERLRIFWTPETQQSVLKGLRRS
ANPKDAALLASRRGLMPVSGGVKTRGA
>Mature_906_residues
TTVSRQIQSADEAICRNIESLADQRALLSQNVLAQLRNLVEGVAVRLHTGSPDAEFNYAAVEPALAFVKSEARFNFLGKF
HKLIQKSVSHYTLDGDASERLMLKYYEYLHRVRSLLQDNCGVTVLANLEAFPVDLDPSLQEYQEKIAARIEAVRSSRPSS
SIRDRYYIHKTRPFFVGGRIYYEVTFYRAVDKVNKFDRIIAFSYIDMTDKYAAMLTLQRDSIEVLGQTMPITIVREWEVS
IRPCEFKNFARLLGITLDVRTSSVEYRYLMRGLTKSSVNLLDLVDMPDDKYTQVRTAGTGDATKSQVFPVLDEVRHIVRS
AAPGHNVLRYLMLRMHNQILKPQHLQGGCYLLSDMKLQFGCIPFDTMPFCTSLPGHNPRYWDLVESLDATDRNHELLARC
VRNNVERHGILYTPVVELEKFGNVNGLISTYNNKLYYKHPERRLVLDKGHVFISGYENDTVSIVEKLQEHASAGIAGYTQ
AVERWLDETSRSIDDQVKKDALKQLFSQSRVALIYGAAGTGKSTMVDHIAHYFNDKAKLFLAHTHPAIDNLKRKVTAQNS
AFRTISSQISRRTTDPVYDLLIIDECSTVSNADLIKVLEKTSFKLLVLVGDVYQIESIEFGNWFGIIRSFIPSTSVFELT
TPFRTKNDSLLGFWNKVRAIEDDIAEVMARNGYSTALDKTLFETQGQDEIILCLNYDGLYGINNINRFLQSSNPGTATTW
RESTYKIGDPVLFHETERFRPVIYNNLKGWIVGIAHAPGRIQFDVKLDRPLSEFDVECDELEWVVDSTVRFSVYEYDDTS
DEDDDSLNSSVPFQVAYAVSIHKAQGLEYDSVKIVITDANEDDITHSIFYTAVTRARERLRIFWTPETQQSVLKGLRRSA
NPKDAALLASRRGLMPVSGGVKTRGA

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.5 [C]

Molecular weight: Translated: 103089; Mature: 102958

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVSRQIQSADEAICRNIESLADQRALLSQNVLAQLRNLVEGVAVRLHTGSPDAEFNYA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCH
AVEPALAFVKSEARFNFLGKFHKLIQKSVSHYTLDGDASERLMLKYYEYLHRVRSLLQDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHCC
CGVTVLANLEAFPVDLDPSLQEYQEKIAARIEAVRSSRPSSSIRDRYYIHKTRPFFVGGR
CCEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEECCE
IYYEVTFYRAVDKVNKFDRIIAFSYIDMTDKYAAMLTLQRDSIEVLGQTMPITIVREWEV
EEEEEEHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEEECCHHHHCCCCCCEEEEEEEEC
SIRPCEFKNFARLLGITLDVRTSSVEYRYLMRGLTKSSVNLLDLVDMPDDKYTQVRTAGT
EECCCCHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCC
GDATKSQVFPVLDEVRHIVRSAAPGHNVLRYLMLRMHNQILKPQHLQGGCYLLSDMKLQF
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEE
GCIPFDTMPFCTSLPGHNPRYWDLVESLDATDRNHELLARCVRNNVERHGILYTPVVELE
CCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCEEECCHHHHH
KFGNVNGLISTYNNKLYYKHPERRLVLDKGHVFISGYENDTVSIVEKLQEHASAGIAGYT
HCCCCCCEEEECCCEEEEECCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCHHHHH
QAVERWLDETSRSIDDQVKKDALKQLFSQSRVALIYGAAGTGKSTMVDHIAHYFNDKAKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEE
FLAHTHPAIDNLKRKVTAQNSAFRTISSQISRRTTDPVYDLLIIDECSTVSNADLIKVLE
EEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHH
KTSFKLLVLVGDVYQIESIEFGNWFGIIRSFIPSTSVFELTTPFRTKNDSLLGFWNKVRA
HCCCEEEEEECCEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHH
IEDDIAEVMARNGYSTALDKTLFETQGQDEIILCLNYDGLYGINNINRFLQSSNPGTATT
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEE
WRESTYKIGDPVLFHETERFRPVIYNNLKGWIVGIAHAPGRIQFDVKLDRPLSEFDVECD
ECCCCEECCCEEEEECCCCCCCHHHCCCCEEEEEEEECCCEEEEEEEECCCHHHHCCCHH
ELEWVVDSTVRFSVYEYDDTSDEDDDSLNSSVPFQVAYAVSIHKAQGLEYDSVKIVITDA
HHHHEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCEEEEEECC
NEDDITHSIFYTAVTRARERLRIFWTPETQQSVLKGLRRSANPKDAALLASRRGLMPVSG
CCCCHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
GVKTRGA
CCCCCCC
>Mature Secondary Structure 
TTVSRQIQSADEAICRNIESLADQRALLSQNVLAQLRNLVEGVAVRLHTGSPDAEFNYA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCH
AVEPALAFVKSEARFNFLGKFHKLIQKSVSHYTLDGDASERLMLKYYEYLHRVRSLLQDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHCC
CGVTVLANLEAFPVDLDPSLQEYQEKIAARIEAVRSSRPSSSIRDRYYIHKTRPFFVGGR
CCEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEECCE
IYYEVTFYRAVDKVNKFDRIIAFSYIDMTDKYAAMLTLQRDSIEVLGQTMPITIVREWEV
EEEEEEHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEEECCHHHHCCCCCCEEEEEEEEC
SIRPCEFKNFARLLGITLDVRTSSVEYRYLMRGLTKSSVNLLDLVDMPDDKYTQVRTAGT
EECCCCHHHHHHHHCEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCC
GDATKSQVFPVLDEVRHIVRSAAPGHNVLRYLMLRMHNQILKPQHLQGGCYLLSDMKLQF
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEE
GCIPFDTMPFCTSLPGHNPRYWDLVESLDATDRNHELLARCVRNNVERHGILYTPVVELE
CCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCEEECCHHHHH
KFGNVNGLISTYNNKLYYKHPERRLVLDKGHVFISGYENDTVSIVEKLQEHASAGIAGYT
HCCCCCCEEEECCCEEEEECCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCHHHHH
QAVERWLDETSRSIDDQVKKDALKQLFSQSRVALIYGAAGTGKSTMVDHIAHYFNDKAKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEE
FLAHTHPAIDNLKRKVTAQNSAFRTISSQISRRTTDPVYDLLIIDECSTVSNADLIKVLE
EEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHH
KTSFKLLVLVGDVYQIESIEFGNWFGIIRSFIPSTSVFELTTPFRTKNDSLLGFWNKVRA
HCCCEEEEEECCEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHH
IEDDIAEVMARNGYSTALDKTLFETQGQDEIILCLNYDGLYGINNINRFLQSSNPGTATT
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEE
WRESTYKIGDPVLFHETERFRPVIYNNLKGWIVGIAHAPGRIQFDVKLDRPLSEFDVECD
ECCCCEECCCEEEEECCCCCCCHHHCCCCEEEEEEEECCCEEEEEEEECCCHHHHCCCHH
ELEWVVDSTVRFSVYEYDDTSDEDDDSLNSSVPFQVAYAVSIHKAQGLEYDSVKIVITDA
HHHHEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCEEEEEECC
NEDDITHSIFYTAVTRARERLRIFWTPETQQSVLKGLRRSANPKDAALLASRRGLMPVSG
CCCCHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
GVKTRGA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Double-stranded DNA; H2O; DNA [C]

Specific reaction: Double-stranded DNA + H2O = Hydrolyzed double-stranded DNA Protein + DNA = Protein-DNA [C]

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA