Click here to switch to the map view.

The map label for this gene is fecI [C]

Identifier: 39995827

GI number: 39995827

Start: 771279

End: 771824

Strand: Direct

Name: fecI [C]

Synonym: GSU0721

Alternate gene names: 39995827

Gene position: 771279-771824 (Clockwise)

Preceding gene: 39995824

Following gene: 39995828

Centisome position: 20.22

GC content: 65.2

Gene sequence:

>546_bases
GTGACGCTGGATACAACAGACGAATTGAACCGGTTCCTGGCCGGCGTGGAGCGCAGGGCGTTCCGCATGGCGCGGCTCGC
CACGTCCGACGATGACGAGGCCCTGGACGTGGTCCAGGACGCCATGCTCGGCTTTGTCAGAAACTATGCGCGGAAACCCG
AGGCGGAGTGGCCGCCGTTGTTCCACCGGACGCTCCAGAGCCGGATCGTGGACTGGCACCGGCGCTCGACCCTGCGGAAC
AGGTTCCGGGCGTGGTTCGGCAAAAACGACGACGAAGATGGCGGCGATCCCTTGGACGGGATCCCGGACGTGAATTCGCC
TGATCCGGCGCGACAGCTCCTGGACCGGGACCTGGGGCAGGCAATCGAAGCGGCTCTGCGCAAGTTGCCCACGCGGCAGC
GGCAGGCGTTTCTCCTGCGCAACTGGGAAGGGCTCGATACGTCGGAAACCGCCTTTGCCATGGGATGCTCCGAGGGGAGC
GTCAAGACCCATCTTTCGCGGGCGGTTCATGCGCTTCGCGGCATGCTTGAGGAGTACGGACCATGA

Upstream 100 bases:

>100_bases
AACCGGTGCCGTGAATGTCAACGCGACCAACGGAACCATTCTCTGTCAACCGGACAGCAGCCCGGACGTTATAAACTACA
AATGTCGCGGGCAAGGAGAA

Downstream 100 bases:

>100_bases
AACATGACGAGCGTGACGAGCGGATGATTCAAACGGTCAGGCGCGAACTCGACCGGAGCACCAGCGACCTGGACGGCGCC
ATTGCGGGACGGCTGGCGGA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor; Sigma-; LuxR Family Transcriptional Regulator; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-70 Factor; Sigma Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTLDTTDELNRFLAGVERRAFRMARLATSDDDEALDVVQDAMLGFVRNYARKPEAEWPPLFHRTLQSRIVDWHRRSTLRN
RFRAWFGKNDDEDGGDPLDGIPDVNSPDPARQLLDRDLGQAIEAALRKLPTRQRQAFLLRNWEGLDTSETAFAMGCSEGS
VKTHLSRAVHALRGMLEEYGP

Sequences:

>Translated_181_residues
MTLDTTDELNRFLAGVERRAFRMARLATSDDDEALDVVQDAMLGFVRNYARKPEAEWPPLFHRTLQSRIVDWHRRSTLRN
RFRAWFGKNDDEDGGDPLDGIPDVNSPDPARQLLDRDLGQAIEAALRKLPTRQRQAFLLRNWEGLDTSETAFAMGCSEGS
VKTHLSRAVHALRGMLEEYGP
>Mature_180_residues
TLDTTDELNRFLAGVERRAFRMARLATSDDDEALDVVQDAMLGFVRNYARKPEAEWPPLFHRTLQSRIVDWHRRSTLRNR
FRAWFGKNDDEDGGDPLDGIPDVNSPDPARQLLDRDLGQAIEAALRKLPTRQRQAFLLRNWEGLDTSETAFAMGCSEGSV
KTHLSRAVHALRGMLEEYGP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20652; Mature: 20521

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDTTDELNRFLAGVERRAFRMARLATSDDDEALDVVQDAMLGFVRNYARKPEAEWPPL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
FHRTLQSRIVDWHRRSTLRNRFRAWFGKNDDEDGGDPLDGIPDVNSPDPARQLLDRDLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AIEAALRKLPTRQRQAFLLRNWEGLDTSETAFAMGCSEGSVKTHLSRAVHALRGMLEEYG
HHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
P
C
>Mature Secondary Structure 
TLDTTDELNRFLAGVERRAFRMARLATSDDDEALDVVQDAMLGFVRNYARKPEAEWPPL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
FHRTLQSRIVDWHRRSTLRNRFRAWFGKNDDEDGGDPLDGIPDVNSPDPARQLLDRDLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AIEAALRKLPTRQRQAFLLRNWEGLDTSETAFAMGCSEGSVKTHLSRAVHALRGMLEEYG
HHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA