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The map label for this gene is rimM

Identifier: 39995751

GI number: 39995751

Start: 678444

End: 678962

Strand: Direct

Name: rimM

Synonym: GSU0645

Alternate gene names: 39995751

Gene position: 678444-678962 (Clockwise)

Preceding gene: 39995750

Following gene: 39995752

Centisome position: 17.79

GC content: 57.03

Gene sequence:

>519_bases
GTGCGGCAGGATGATCTCAAGCTGCTCGGCAAGATAGTAACAACTCACGGGATTCGGGGGCAACTCAAGGTCGCTTCCTT
TTCCGGTGAATTTGATACGATCCTTTCCCTTGAGACGGTCGTGCTCAAGGGAAAGGACGGCAGGATGGAGACATTCCCCG
TGGCACGGGCGACCGTGCATCATGACCGGGTGCTCCTTTCGCTTACGCCGTTTACGAATATAAACGAAGTACTTCATCTG
ATTTCGGCTGTGAGCTACGCCCATCGCGATCAGTTTCCCCCCTTGGAAGAGGGGGAGTATTACTGGTGCGACCTCATAGG
TCTCCAGGTTGTGACAGCGGCGGGAACCGTCATCGGCCGGCTCGACTCGATACTCCCCACGGAAAGTCATGATGTCTACG
TGGTACGCGGTGCCGACAGGGAATATCTCATCCCGGCCGTAGAGGATGTGGTGGTGCAGGTCGACCTTGAGGCAGGCACC
ATGACGGTCAGTCCCCCCGAGGGGCTGCTCGATCTATGA

Upstream 100 bases:

>100_bases
CGGCCAAGGCCATCAGGACCCTGCTAAATGCGGTTTCGACCAAGGACAACAAGAAAGCTGTGCTGAAGATTGTGGAATAA
TGACGCGAAGCAGTGAGCCG

Downstream 100 bases:

>100_bases
AATTTGACATATTGACGCTGTTTCCAGCCATGTTCGACGGGCCTCTTACCGAAAGCATCATCCGGCGGGCCGTGGAACGG
GGGTTCGTGGATATCAGTCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVHHDRVLLSLTPFTNINEVLHL
ISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTAAGTVIGRLDSILPTESHDVYVVRGADREYLIPAVEDVVVQVDLEAGT
MTVSPPEGLLDL

Sequences:

>Translated_172_residues
MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVHHDRVLLSLTPFTNINEVLHL
ISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTAAGTVIGRLDSILPTESHDVYVVRGADREYLIPAVEDVVVQVDLEAGT
MTVSPPEGLLDL
>Mature_172_residues
MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVHHDRVLLSLTPFTNINEVLHL
ISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTAAGTVIGRLDSILPTESHDVYVVRGADREYLIPAVEDVVVQVDLEAGT
MTVSPPEGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=28.4023668639053, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_GEOSL (Q74FG4)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_951702.1
- ProteinModelPortal:   Q74FG4
- SMR:   Q74FG4
- GeneID:   2687183
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU0645
- NMPDR:   fig|243231.1.peg.640
- TIGR:   GSU0645
- HOGENOM:   HBG703775
- OMA:   FAWLFFE
- ProtClustDB:   CLSK827971
- BioCyc:   GSUL243231:GSU_0645-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18954; Mature: 18954

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVH
CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHEEEEEEEEECCCCCEEECCCHHEEEE
HDRVLLSLTPFTNINEVLHLISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTAAGTVIGR
CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LDSILPTESHDVYVVRGADREYLIPAVEDVVVQVDLEAGTMTVSPPEGLLDL
HHHHCCCCCCCEEEEECCCCCEECCCCCEEEEEEEECCCEEEECCCCCCCCC
>Mature Secondary Structure
MRQDDLKLLGKIVTTHGIRGQLKVASFSGEFDTILSLETVVLKGKDGRMETFPVARATVH
CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHEEEEEEEEECCCCCEEECCCHHEEEE
HDRVLLSLTPFTNINEVLHLISAVSYAHRDQFPPLEEGEYYWCDLIGLQVVTAAGTVIGR
CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LDSILPTESHDVYVVRGADREYLIPAVEDVVVQVDLEAGTMTVSPPEGLLDL
HHHHCCCCCCCEEEEECCCCCEECCCCCEEEEEEEECCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA