Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 39995493

GI number: 39995493

Start: 417404

End: 418288

Strand: Direct

Name: ybjT [H]

Synonym: GSU0385

Alternate gene names: 39995493

Gene position: 417404-418288 (Clockwise)

Preceding gene: 39995491

Following gene: 39995496

Centisome position: 10.94

GC content: 65.2

Gene sequence:

>885_bases
ATGAAGATATTCGTTACCGGAGGAACCGGTTTTGTGGGAGGGCACGTGCGGAGGGCGCTGCTGGAACGGGGGCACTCGCT
CCGGCTCCTGGTCCACCAGCGAAGCGAGGGGGTCGAGGCCGGGATCGAGCAGGTGGAGGGCGACGTGACGCGGCCGGATA
CCTTTGCCGGGGCCGTGGCGGGGTGTGACGCCACCGTCAACCTGGTGGGGATCATCCGGGAGTTTCCCGGTCGGGGGATA
ACCTTCGAAAAGCTCCACGTGGAGGCCACGCGCAACGTGGTGGAGGCCGCCAGGGCAGCGGGCATCCGGCGCCATCTCCA
GATGTCGGCGCTGGCCACGCGCCCTGACGCCACCGCGGCCTATCACCGCACCAAGTGGCGGGCGGAGGAGGTCGTGCGGC
AGTCGGAGCTCGACTGGACCATTTTTCGGCCATCCCTGATCTTCGGGCCCAAGGGCGCCTTTGTGGACATGCTGGCGGGA
TTCGTCCGCAGGTTTCCGGCCGTGCCGGTCGTCGGCGACGGCACCTACCGGCTCCAACCGGTTTCGGTCGACGATGTGGC
CCGCTGTTTCGCCCTTGCCCTGGACATGCCGGAAACCTTCGGACAGACCTATGAGCTCTGCGGCCCGGACCGCCTCACCT
ACAACGAGGTCCTCGACATCATCGGCCGGGTGCTCGGCAAGGGCCATGTGGTCAAGATTCCCCAGCCGCTGGGACTGCTG
AAGCTCGTGGTGCCGATCATGCAGGGATTTTCCTTCTTTCCCCTCACCATGGACCAGATCACCCTCTTGACTGAGGAAAA
TATCTGCTCGAATGCCTGGCCCTCCGTCTTCGGCTTTGAGCCGTGCCGTTTCGAGGCGGGAATCGCCTCGTTCCTGCATC
GCTGA

Upstream 100 bases:

>100_bases
GTATGCGATCATACCGGTGCAAGGTGTGGCAATCGGCGGCGGATGCGCTACACTTCACCTCAATGGAGCCTCAGTCACGC
TCCCGATCGGAGGAACGCTC

Downstream 100 bases:

>100_bases
CCCCACGCGGGACAGCTGCTCTTCCTTGCCGCAACGGCTAGAGTAATCCAGCCGAGACAAAGCTGGTGAAGCGACCGTCA
CCGATGATGATGTGGTCCAG

Product: NADH dehydrogenase subunit

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGVEAGIEQVEGDVTRPDTFAGAVAGCDATVNLVGIIREFPGRGI
TFEKLHVEATRNVVEAARAAGIRRHLQMSALATRPDATAAYHRTKWRAEEVVRQSELDWTIFRPSLIFGPKGAFVDMLAG
FVRRFPAVPVVGDGTYRLQPVSVDDVARCFALALDMPETFGQTYELCGPDRLTYNEVLDIIGRVLGKGHVVKIPQPLGLL
KLVVPIMQGFSFFPLTMDQITLLTEENICSNAWPSVFGFEPCRFEAGIASFLHR

Sequences:

>Translated_294_residues
MKIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGVEAGIEQVEGDVTRPDTFAGAVAGCDATVNLVGIIREFPGRGI
TFEKLHVEATRNVVEAARAAGIRRHLQMSALATRPDATAAYHRTKWRAEEVVRQSELDWTIFRPSLIFGPKGAFVDMLAG
FVRRFPAVPVVGDGTYRLQPVSVDDVARCFALALDMPETFGQTYELCGPDRLTYNEVLDIIGRVLGKGHVVKIPQPLGLL
KLVVPIMQGFSFFPLTMDQITLLTEENICSNAWPSVFGFEPCRFEAGIASFLHR
>Mature_294_residues
MKIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGVEAGIEQVEGDVTRPDTFAGAVAGCDATVNLVGIIREFPGRGI
TFEKLHVEATRNVVEAARAAGIRRHLQMSALATRPDATAAYHRTKWRAEEVVRQSELDWTIFRPSLIFGPKGAFVDMLAG
FVRRFPAVPVVGDGTYRLQPVSVDDVARCFALALDMPETFGQTYELCGPDRLTYNEVLDIIGRVLGKGHVVKIPQPLGLL
KLVVPIMQGFSFFPLTMDQITLLTEENICSNAWPSVFGFEPCRFEAGIASFLHR

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=217, Percent_Identity=27.1889400921659, Blast_Score=79, Evalue=4e-15,
Organism=Escherichia coli, GI87081793, Length=239, Percent_Identity=21.7573221757322, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24667554, Length=242, Percent_Identity=28.5123966942149, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 32375; Mature: 32375

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGVEAGIEQVEGDVTRPDTFAGAVA
CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHH
GCDATVNLVGIIREFPGRGITFEKLHVEATRNVVEAARAAGIRRHLQMSALATRPDATAA
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
YHRTKWRAEEVVRQSELDWTIFRPSLIFGPKGAFVDMLAGFVRRFPAVPVVGDGTYRLQP
HHHHHHHHHHHHHHHCCCEEEECCEEEECCCCHHHHHHHHHHHHCCCCEEECCCCEEEEC
VSVDDVARCFALALDMPETFGQTYELCGPDRLTYNEVLDIIGRVLGKGHVVKIPQPLGLL
CCHHHHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHH
KLVVPIMQGFSFFPLTMDQITLLTEENICSNAWPSVFGFEPCRFEAGIASFLHR
HHHHHHHCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKIFVTGGTGFVGGHVRRALLERGHSLRLLVHQRSEGVEAGIEQVEGDVTRPDTFAGAVA
CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHH
GCDATVNLVGIIREFPGRGITFEKLHVEATRNVVEAARAAGIRRHLQMSALATRPDATAA
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
YHRTKWRAEEVVRQSELDWTIFRPSLIFGPKGAFVDMLAGFVRRFPAVPVVGDGTYRLQP
HHHHHHHHHHHHHHHCCCEEEECCEEEECCCCHHHHHHHHHHHHCCCCEEECCCCEEEEC
VSVDDVARCFALALDMPETFGQTYELCGPDRLTYNEVLDIIGRVLGKGHVVKIPQPLGLL
CCHHHHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHH
KLVVPIMQGFSFFPLTMDQITLLTEENICSNAWPSVFGFEPCRFEAGIASFLHR
HHHHHHHCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]