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The map label for this gene is 39995328

Identifier: 39995328

GI number: 39995328

Start: 227086

End: 227922

Strand: Direct

Name: 39995328

Synonym: GSU0218

Alternate gene names: NA

Gene position: 227086-227922 (Clockwise)

Preceding gene: 39995327

Following gene: 39995329

Centisome position: 5.95

GC content: 63.44

Gene sequence:

>837_bases
GTGCTGCGATATCTCGTTATCCTCTGCCTGGCCCTGGTGCTGCCCCTGCACGGTGGCGCGGCCACCGACGGATCCACGCC
GGTTGAAGAGCACCATCACCATGCTGCGCCGGCTGCGGCGGAGGCAGCCGGCGTGGGAGTCGACGAGCGGTTGGGGGAGA
AGATTCCCCTCGACCTGACGTTCAACGACGAAGCCGGCCGGCCGGTTCGCTTGGCGGATCTGGTTACGGGACCGACGATT
ATCCTTCCCGTTTACTACCGCTGCACCAATGTCTGCAATTTCCTCCAGAACGGCATGGCAGCGGTGATCCCCGAGATACG
GCGGAAACCGGGGGAGGAGTACCGGGTGATTTCCGTCAGCTTCGACGAGACGGAGCCGCCCGATCTGGCTGCCCGTTACC
GGCGGATCTATCAGGGTGCCATCACCACGCCGTTCCCTGGGGACGGCTGGCGGTTCCTGACCGGTGACGCGGCGAATATC
CGGCAACTGACCGACGCGATCGGATATCGCTTCCAGCGGAAGGGGCGCGACTTCGTGCATCCGGTGGCAAGCGTGGTGAT
CGCCGGGGACGGCACCATCATCCGCTATCTCTACGGGACCGCCTTCCTGCCCAAGGATGTGACCCTGGCCTTGCTGGAGG
CGCGGGAGGGGAAAGTCGGCAAGACCATCCGGACGGTGGTGGGATACTGCTTTTCCTTTGATCCGAAGCAGAAAACCTAT
GTCTTCAACCTGCTGCGCGTGAGCGCCACGGTAGTCATCCTGACAGCCGGGGCATTTCTCGCCTTTCTGCTGACAACGGG
CAGAACGGGCTCACGGCAGCGCAAGGGAGGATCATGA

Upstream 100 bases:

>100_bases
CCTAGCCGGCCGTTGGAAAGAACGCCGGTGCGGGACCGGCAGAACAGACCGCCCCCGCACCGGCCCTCGACAGGTTCCGG
CGTCCATGACGGAGGGAAGG

Downstream 100 bases:

>100_bases
ACCGGTCTGAACGGACAGGCTCCGCTGCCGGCTTCTGGAGCGATACGGAAAAGGGCGGTATCGGCGCCTGGCTTCTCTCC
ACCGACCACAAACGGATCGG

Product: hypothetical protein

Products: NA

Alternate protein names: SCO1/SenC Family Protein; SCO1/SenC/PrrC Family Protein; SenC/PrrC; Cytochrome C Oxidase Synthesis Factor; SenC/PrrC-Like; Respiratory System Biogenesis Protein

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MLRYLVILCLALVLPLHGGAATDGSTPVEEHHHHAAPAAAEAAGVGVDERLGEKIPLDLTFNDEAGRPVRLADLVTGPTI
ILPVYYRCTNVCNFLQNGMAAVIPEIRRKPGEEYRVISVSFDETEPPDLAARYRRIYQGAITTPFPGDGWRFLTGDAANI
RQLTDAIGYRFQRKGRDFVHPVASVVIAGDGTIIRYLYGTAFLPKDVTLALLEAREGKVGKTIRTVVGYCFSFDPKQKTY
VFNLLRVSATVVILTAGAFLAFLLTTGRTGSRQRKGGS

Sequences:

>Translated_278_residues
MLRYLVILCLALVLPLHGGAATDGSTPVEEHHHHAAPAAAEAAGVGVDERLGEKIPLDLTFNDEAGRPVRLADLVTGPTI
ILPVYYRCTNVCNFLQNGMAAVIPEIRRKPGEEYRVISVSFDETEPPDLAARYRRIYQGAITTPFPGDGWRFLTGDAANI
RQLTDAIGYRFQRKGRDFVHPVASVVIAGDGTIIRYLYGTAFLPKDVTLALLEAREGKVGKTIRTVVGYCFSFDPKQKTY
VFNLLRVSATVVILTAGAFLAFLLTTGRTGSRQRKGGS
>Mature_278_residues
MLRYLVILCLALVLPLHGGAATDGSTPVEEHHHHAAPAAAEAAGVGVDERLGEKIPLDLTFNDEAGRPVRLADLVTGPTI
ILPVYYRCTNVCNFLQNGMAAVIPEIRRKPGEEYRVISVSFDETEPPDLAARYRRIYQGAITTPFPGDGWRFLTGDAANI
RQLTDAIGYRFQRKGRDFVHPVASVVIAGDGTIIRYLYGTAFLPKDVTLALLEAREGKVGKTIRTVVGYCFSFDPKQKTY
VFNLLRVSATVVILTAGAFLAFLLTTGRTGSRQRKGGS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30334; Mature: 30334

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYLVILCLALVLPLHGGAATDGSTPVEEHHHHAAPAAAEAAGVGVDERLGEKIPLDLT
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCHHHCCCCCCEEEE
FNDEAGRPVRLADLVTGPTIILPVYYRCTNVCNFLQNGMAAVIPEIRRKPGEEYRVISVS
ECCCCCCCEEEHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEE
FDETEPPDLAARYRRIYQGAITTPFPGDGWRFLTGDAANIRQLTDAIGYRFQRKGRDFVH
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHH
PVASVVIAGDGTIIRYLYGTAFLPKDVTLALLEAREGKVGKTIRTVVGYCFSFDPKQKTY
HHHHEEECCCCCEEEEHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
VFNLLRVSATVVILTAGAFLAFLLTTGRTGSRQRKGGS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLRYLVILCLALVLPLHGGAATDGSTPVEEHHHHAAPAAAEAAGVGVDERLGEKIPLDLT
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHCCCCHHHCCCCCCEEEE
FNDEAGRPVRLADLVTGPTIILPVYYRCTNVCNFLQNGMAAVIPEIRRKPGEEYRVISVS
ECCCCCCCEEEHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEE
FDETEPPDLAARYRRIYQGAITTPFPGDGWRFLTGDAANIRQLTDAIGYRFQRKGRDFVH
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHH
PVASVVIAGDGTIIRYLYGTAFLPKDVTLALLEAREGKVGKTIRTVVGYCFSFDPKQKTY
HHHHEEECCCCCEEEEHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
VFNLLRVSATVVILTAGAFLAFLLTTGRTGSRQRKGGS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA