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The map label for this gene is cspLA [H]

Identifier: 39995317

GI number: 39995317

Start: 217397

End: 217597

Strand: Direct

Name: cspLA [H]

Synonym: GSU0207

Alternate gene names: 39995317

Gene position: 217397-217597 (Clockwise)

Preceding gene: 39995316

Following gene: 39995318

Centisome position: 5.7

GC content: 53.23

Gene sequence:

>201_bases
ATGGTAAACGGAACAGTGAAGTGGTTCAATGACAGCAAGGGCTTTGGTTTTCTTGAGCAGGAGAATGGCGAGGACGTATT
CGTGCATTTCTCCGCCATCAACGGCAACGGCTTCAAGTCCCTTGCTGAAGGCGATAGGGTAACCTTCGAAGTGACCAAGG
GCCCCAAGGGGCTTCAGGCCGCTAACGTGACGCGGATATAG

Upstream 100 bases:

>100_bases
CGGGTTTTTTTCTTGTTTTCCTGAAACTGAACCTGCTATTGTTTGTATGTCCGCGCGATGCGGAACACATCAAAAAAGTA
AGTATGGAGAAAGCAAGTAC

Downstream 100 bases:

>100_bases
ATTGACCGCACTGCAGTGAGAAAGGCCCCGGAGATATCCGGGGCCTTTTTTTGTGTCCGATGCGAACGGGCTGATTCCTC
CCCATGGTTTACGAAAAAGC

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MVNGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKGLQAANVTRI

Sequences:

>Translated_66_residues
MVNGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKGLQAANVTRI
>Mature_66_residues
MVNGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKGLQAANVTRI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=65.1515151515152, Blast_Score=86, Evalue=3e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=63.6363636363636, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=54.5454545454545, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=47.7611940298507, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=53.968253968254, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=51.5151515151515, Blast_Score=69, Evalue=8e-14,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=48.4848484848485, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7208; Mature: 7208

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVTRI
CCEECC
>Mature Secondary Structure
MVNGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVTRI
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]