| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is cbpA [C]
Identifier: 39995125
GI number: 39995125
Start: 22322
End: 23206
Strand: Direct
Name: cbpA [C]
Synonym: GSU0014
Alternate gene names: 39995125
Gene position: 22322-23206 (Clockwise)
Preceding gene: 39995122
Following gene: 39995130
Centisome position: 0.59
GC content: 60.68
Gene sequence:
>885_bases ATGGCGCAGCACGACTATTACGAAACCCTCGGCCTGAAAAAGGGGGCAACCGAAGAGGAGATCAAGAAGGCCTACCGCAA ACTGGCCATCACGTATCACCCGGACAAAAATCCCGGCGACGCCGCGGCTGAGGAAAAATTCAAGGAGATCAACGAGGCCT ATGCTGTCCTCTCCGATCCCCAGAAGCGGGCCCAGTACGATCAGTTCGGTTCCAACGGATTCCACCAGCGCTTCTCCCAG GAAGACATTTTCCGGGGGTTCGACGTGGGGGACATGTTCAAGGATATGGGGGTCGGCACCGACGACATCTTTTCCCGCAT ATTCGGAGGAGGATTCCGTCAGGGAGGCTTCAGCTTCACAGGGACACGGCAGCGGGGTGGGGATTTTACCATGGAGCTTC CCGTCACCTTCCGGGAGGCCTACGCGGGCTGCGAAAAGCGGGTTGCGTACCGGCGGGACGGCATGCGGGAGGAGATCTCC GTCAAGGTCCCGGCCGGCGTTGAAACCGGGGCGCGCCTGCGGGTTGCGGGCAAGGGAGGGGTCGGCAGCGGCGGCACGGG GGACCTCTACCTGGTTGTGAAGGTGGGAGGCGATCCACAGTTCCACCGCGAAGGAGATGACATCGTGGTGGAACGGGAGA TCAAATTCACCGACGCGGCACTCGGCGCGAGCCTTGATGTGCCGACCCTGGAAGGGACCAAGCGCGTCAAGGTTCCCGCC GGTATCCAGTCCGGCACCAAGATTCGCCTGAAGGGCCTTGGTTTCCCCCATATGGGGAAAACAGCCAAGGGAGATCTCTA CGTTCACATCAATGTATCGGTTCCCCGGTCGCTTTCCGCCGACCAAAAGGCTATTCTGGAAAAGCTGCGTGAGGCGGGGC TGTAA
Upstream 100 bases:
>100_bases TTAGACTGATGAACTGATCCTGTCAACCCCTGTTCATTGACAGGGGGGCAAAGTACCATTACATTCTGAGGGCCACATTC ATCGTGAAAGGATCTATGTC
Downstream 100 bases:
>100_bases CGAGGGGTGCCATCTGAATCACGACGCCAGGGAGATGGATATGGCATAAAACCCCCCCGGAGCCGCGGCCCCGGGGGGGT TTTACGCTCTGCTCGGTTGG
Product: phage integrase family site specific recombinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MAQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDPQKRAQYDQFGSNGFHQRFSQ EDIFRGFDVGDMFKDMGVGTDDIFSRIFGGGFRQGGFSFTGTRQRGGDFTMELPVTFREAYAGCEKRVAYRRDGMREEIS VKVPAGVETGARLRVAGKGGVGSGGTGDLYLVVKVGGDPQFHREGDDIVVEREIKFTDAALGASLDVPTLEGTKRVKVPA GIQSGTKIRLKGLGFPHMGKTAKGDLYVHINVSVPRSLSADQKAILEKLREAGL
Sequences:
>Translated_294_residues MAQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDPQKRAQYDQFGSNGFHQRFSQ EDIFRGFDVGDMFKDMGVGTDDIFSRIFGGGFRQGGFSFTGTRQRGGDFTMELPVTFREAYAGCEKRVAYRRDGMREEIS VKVPAGVETGARLRVAGKGGVGSGGTGDLYLVVKVGGDPQFHREGDDIVVEREIKFTDAALGASLDVPTLEGTKRVKVPA GIQSGTKIRLKGLGFPHMGKTAKGDLYVHINVSVPRSLSADQKAILEKLREAGL >Mature_293_residues AQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDPQKRAQYDQFGSNGFHQRFSQE DIFRGFDVGDMFKDMGVGTDDIFSRIFGGGFRQGGFSFTGTRQRGGDFTMELPVTFREAYAGCEKRVAYRRDGMREEISV KVPAGVETGARLRVAGKGGVGSGGTGDLYLVVKVGGDPQFHREGDDIVVEREIKFTDAALGASLDVPTLEGTKRVKVPAG IQSGTKIRLKGLGFPHMGKTAKGDLYVHINVSVPRSLSADQKAILEKLREAGL
Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI6631085, Length=332, Percent_Identity=32.5301204819277, Blast_Score=150, Evalue=1e-36, Organism=Homo sapiens, GI205360838, Length=354, Percent_Identity=30.5084745762712, Blast_Score=139, Evalue=4e-33, Organism=Homo sapiens, GI205360840, Length=354, Percent_Identity=30.5084745762712, Blast_Score=139, Evalue=4e-33, Organism=Homo sapiens, GI5453690, Length=339, Percent_Identity=30.6784660766962, Blast_Score=135, Evalue=5e-32, Organism=Homo sapiens, GI201862518, Length=347, Percent_Identity=31.700288184438, Blast_Score=128, Evalue=8e-30, Organism=Homo sapiens, GI201862587, Length=347, Percent_Identity=31.700288184438, Blast_Score=127, Evalue=8e-30, Organism=Homo sapiens, GI56549115, Length=347, Percent_Identity=31.700288184438, Blast_Score=127, Evalue=9e-30, Organism=Homo sapiens, GI7706495, Length=327, Percent_Identity=28.7461773700306, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI39204547, Length=314, Percent_Identity=26.1146496815287, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI5031741, Length=354, Percent_Identity=28.2485875706215, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI194306642, Length=113, Percent_Identity=48.6725663716814, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI194306640, Length=113, Percent_Identity=48.6725663716814, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI29126218, Length=89, Percent_Identity=53.9325842696629, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI4504511, Length=148, Percent_Identity=38.5135135135135, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI194328760, Length=156, Percent_Identity=39.1025641025641, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI194328758, Length=155, Percent_Identity=39.3548387096774, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI45504382, Length=89, Percent_Identity=48.314606741573, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI72534740, Length=125, Percent_Identity=44, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI23503241, Length=108, Percent_Identity=45.3703703703704, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI17388799, Length=108, Percent_Identity=47.2222222222222, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI4885495, Length=108, Percent_Identity=47.2222222222222, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI21553335, Length=72, Percent_Identity=55.5555555555556, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI9558755, Length=104, Percent_Identity=45.1923076923077, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI22749377, Length=117, Percent_Identity=40.1709401709402, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI68077166, Length=63, Percent_Identity=63.4920634920635, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI68077168, Length=63, Percent_Identity=63.4920634920635, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI47777312, Length=117, Percent_Identity=41.8803418803419, Blast_Score=82, Evalue=8e-16, Organism=Homo sapiens, GI27735107, Length=85, Percent_Identity=51.7647058823529, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27151736, Length=139, Percent_Identity=40.2877697841727, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI88501736, Length=141, Percent_Identity=38.2978723404255, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI24308127, Length=144, Percent_Identity=31.25, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI56687498, Length=69, Percent_Identity=50.7246376811594, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI217035105, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI8922563, Length=69, Percent_Identity=43.4782608695652, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI21361912, Length=72, Percent_Identity=43.0555555555556, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI221219056, Length=97, Percent_Identity=45.360824742268, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI262206280, Length=97, Percent_Identity=45.360824742268, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787235, Length=304, Percent_Identity=35.5263157894737, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1786197, Length=276, Percent_Identity=36.5942028985507, Blast_Score=124, Evalue=5e-30, Organism=Caenorhabditis elegans, GI17534355, Length=328, Percent_Identity=32.0121951219512, Blast_Score=134, Evalue=7e-32, Organism=Caenorhabditis elegans, GI17553096, Length=349, Percent_Identity=32.0916905444126, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17553098, Length=349, Percent_Identity=32.0916905444126, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI212645553, Length=336, Percent_Identity=30.3571428571429, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17554644, Length=116, Percent_Identity=49.1379310344828, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17568643, Length=91, Percent_Identity=49.4505494505495, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17507263, Length=89, Percent_Identity=49.438202247191, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538236, Length=121, Percent_Identity=40.495867768595, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115532378, Length=74, Percent_Identity=48.6486486486487, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI86563276, Length=107, Percent_Identity=42.0560747663551, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115532476, Length=69, Percent_Identity=49.2753623188406, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17563890, Length=64, Percent_Identity=53.125, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324321, Length=363, Percent_Identity=25.8953168044077, Blast_Score=104, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6324265, Length=154, Percent_Identity=39.6103896103896, Blast_Score=99, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6323870, Length=70, Percent_Identity=57.1428571428571, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6320888, Length=108, Percent_Identity=44.4444444444444, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6322194, Length=66, Percent_Identity=54.5454545454545, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324103, Length=100, Percent_Identity=43, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323813, Length=113, Percent_Identity=42.4778761061947, Blast_Score=76, Evalue=7e-15, Organism=Saccharomyces cerevisiae, GI6323119, Length=70, Percent_Identity=48.5714285714286, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324252, Length=65, Percent_Identity=47.6923076923077, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6321094, Length=145, Percent_Identity=31.0344827586207, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322388, Length=116, Percent_Identity=38.7931034482759, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI85726398, Length=347, Percent_Identity=32.8530259365994, Blast_Score=142, Evalue=2e-34, Organism=Drosophila melanogaster, GI24658562, Length=334, Percent_Identity=32.3353293413174, Blast_Score=131, Evalue=5e-31, Organism=Drosophila melanogaster, GI24658555, Length=334, Percent_Identity=32.3353293413174, Blast_Score=131, Evalue=5e-31, Organism=Drosophila melanogaster, GI19920464, Length=326, Percent_Identity=27.9141104294479, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI18858081, Length=340, Percent_Identity=25.8823529411765, Blast_Score=101, Evalue=7e-22, Organism=Drosophila melanogaster, GI17737735, Length=85, Percent_Identity=51.7647058823529, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI28574723, Length=85, Percent_Identity=51.7647058823529, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24668523, Length=85, Percent_Identity=51.7647058823529, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24654066, Length=116, Percent_Identity=41.3793103448276, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24654070, Length=116, Percent_Identity=41.3793103448276, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24654068, Length=116, Percent_Identity=41.3793103448276, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24654072, Length=116, Percent_Identity=41.3793103448276, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI20129487, Length=156, Percent_Identity=36.5384615384615, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584014, Length=156, Percent_Identity=36.5384615384615, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24646562, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646560, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646558, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646556, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357547, Length=65, Percent_Identity=60, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI45552811, Length=132, Percent_Identity=38.6363636363636, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI45549272, Length=132, Percent_Identity=38.6363636363636, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI45552813, Length=132, Percent_Identity=38.6363636363636, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=54.6875, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI17648033, Length=120, Percent_Identity=40, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24584630, Length=120, Percent_Identity=40, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21358273, Length=125, Percent_Identity=39.2, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24762799, Length=63, Percent_Identity=55.5555555555556, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24651439, Length=76, Percent_Identity=42.1052631578947, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24668492, Length=70, Percent_Identity=48.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358311, Length=76, Percent_Identity=42.1052631578947, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24651436, Length=76, Percent_Identity=42.1052631578947, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24641698, Length=67, Percent_Identity=49.2537313432836, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641696, Length=67, Percent_Identity=49.2537313432836, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574949, Length=358, Percent_Identity=23.1843575418994, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357687, Length=63, Percent_Identity=55.5555555555556, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355073, Length=66, Percent_Identity=45.4545454545455, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21356411, Length=68, Percent_Identity=50, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 32198; Mature: 32067
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDP CCCCHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCH QKRAQYDQFGSNGFHQRFSQEDIFRGFDVGDMFKDMGVGTDDIFSRIFGGGFRQGGFSFT HHHHHHHHCCCCHHHHHCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEC GTRQRGGDFTMELPVTFREAYAGCEKRVAYRRDGMREEISVKVPAGVETGARLRVAGKGG CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCC VGSGGTGDLYLVVKVGGDPQFHREGDDIVVEREIKFTDAALGASLDVPTLEGTKRVKVPA CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCCCEEEEECC GIQSGTKIRLKGLGFPHMGKTAKGDLYVHINVSVPRSLSADQKAILEKLREAGL CCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure AQHDYYETLGLKKGATEEEIKKAYRKLAITYHPDKNPGDAAAEEKFKEINEAYAVLSDP CCCHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCH QKRAQYDQFGSNGFHQRFSQEDIFRGFDVGDMFKDMGVGTDDIFSRIFGGGFRQGGFSFT HHHHHHHHCCCCHHHHHCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEC GTRQRGGDFTMELPVTFREAYAGCEKRVAYRRDGMREEISVKVPAGVETGARLRVAGKGG CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCC VGSGGTGDLYLVVKVGGDPQFHREGDDIVVEREIKFTDAALGASLDVPTLEGTKRVKVPA CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCCCEEEEECC GIQSGTKIRLKGLGFPHMGKTAKGDLYVHINVSVPRSLSADQKAILEKLREAGL CCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]