Click here to switch to the map view.

The map label for this gene is tnpA_2 [H]

Identifier: 39980854

GI number: 39980854

Start: 2045735

End: 2046244

Strand: Reverse

Name: tnpA_2 [H]

Synonym: STM1957

Alternate gene names: 39980854

Gene position: 2046244-2045735 (Counterclockwise)

Preceding gene: 16765296

Following gene: 16765294

Centisome position: 42.13

GC content: 46.08

Gene sequence:

>510_bases
TTGCGGTCTGGCAACTGCAAAAGTTCAACAAGAAATCAAAAGGGGGTCCCAATGGGGGACGAAAAGAGCTTAGCGCACAC
CCGATGGAACTGTAAATATCACATAGTTTTCGCGCCCAAATACCGAAGACAAGCGTTCTATGGAGAGAAGCGTAGGGCAG
TAGGCAGCATATTAAGAAAATTGTGTGAATGGAAAAACGTACGAATTCTGGAAGCAGAATGTTGTGCAGATCATATTCAC
ATGCTTCTGGAGATCCCGCCGAAGATGAGTGTGTCGAGTTTCATGGGATATCTGAAGGGTAAAAGTAGTCTGATGCTTTA
CGAGCAGTTTGGGGATCTAAAATTCAAATACAGGAACAGGGAGTTCTGGTGCAGAGGGTACTATGTCGATACGGTGGGTA
AGAACACGGCGAAGATACAGGACTACATAAAGCACCAGCTTGAAGAGGATAAAATGGGTGAGCAATTATCGATCCCGTAT
CCGGGCAGCCCGTTTACGGGCCGTAAGTAA

Upstream 100 bases:

>100_bases
CGTTTATTGTCTATGGAAAACCCCCAGCTAGGCTGGGGGTTCCGGAAAGCTTTCAGCTTTAAGCCAGTTATTAAAACCCC
TTTTGATTTGTTAAAACATC

Downstream 100 bases:

>100_bases
CGAAGTTTGATGCAAATGTCAGATCGTATGCGCCTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATCTGAAAA
ACCTCCGGCTATGCCGGAGG

Product: transposase for IS200

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRSGNCKSSTRNQKGVPMGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIH
MLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPY
PGSPFTGRK

Sequences:

>Translated_169_residues
MRSGNCKSSTRNQKGVPMGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIH
MLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPY
PGSPFTGRK
>Mature_169_residues
MRSGNCKSSTRNQKGVPMGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIH
MLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPY
PGSPFTGRK

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 19790; Mature: 19790

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSGNCKSSTRNQKGVPMGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRK
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCHHHHHHHCHHHHHHHHHHHH
LCEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNR
HHCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCC
EFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MRSGNCKSSTRNQKGVPMGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRK
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCHHHHHHHCHHHHHHHHHHHH
LCEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNR
HHCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCC
EFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]