Click here to switch to the map view.

The map label for this gene is yjiH [H]

Identifier: 39546405

GI number: 39546405

Start: 4767736

End: 4768407

Strand: Reverse

Name: yjiH [H]

Synonym: STM4514.S

Alternate gene names: 39546405

Gene position: 4768407-4767736 (Counterclockwise)

Preceding gene: 16767759

Following gene: 16767757

Centisome position: 98.17

GC content: 54.61

Gene sequence:

>672_bases
ATGGCGCAACAAGTGGACGGGGCGGCCATGCCGCTTGATACAGAAAAGGTCGGGATAAAGGGATACCTGGCGTTTTTTCT
CACCATTATTTTCTTTTCCGGCGTATTTTCCGGAAGCGAAGGCTGGTGGCGCGTTTTTGATTTTACCGTACTCAACGGGT
CATTCGGTCATGTGACCGGTACGCAGACCTTTCGTGGCGCGGGCGGAACGGGCGCGAAAGATGGCTTCCTTTTTGCGCTG
GAGCTGGCACCGTCGGTTATCCTTTCTCTGGGTATCATCGCGATTACGGATGGACTGGGCGGTCTGCGGGCGGCGCAGCA
ACTGATGACGCCCATCCTGAAACCGTTGCTTGGCATTCCTGGCATTTGCTCACTGGCGCTGATCGCCAACCTGCAAAATA
CCGACGCCGCGGCGGGTATGACCAAAGAACTGGCGCAGGAAGGCGAAATCACTGAACGCGATAAAGTGATTTTTGCCGCC
TGGCAGACCAGCGGCAGCGCTATTATCACCAACTATTTCTCCTCCGGCGTTGCGGTATTCGCCTTTCTGGGAACGTCAGT
CATCATTCCGCTGGTGGTCATTCTGCTATTCAAATTTATCGGCGCAAACCTTTTGCGCATCTGGATTAACATCGAAGAAC
GCCGTCACCCTGCGCAAGGAGCCCAATCATGA

Upstream 100 bases:

>100_bases
CATTTTGTCCTTACCCTTATGGCTGATAAGGTCTTTCTGTTTCGGGCTTTTTGGCCTGTGGCTACAACCAACACATCATC
AAAAAAATTCGGGGATCGCT

Downstream 100 bases:

>100_bases
CGACTCAGGTACGTAAGAATGTCATGGATATGTTTATCGATGGCGCACGCCGCGGTTTTACCATCGCCACGACCAACCTG
TTACCCAATGTGGTCATGGC

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MAQQVDGAAMPLDTEKVGIKGYLAFFLTIIFFSGVFSGSEGWWRVFDFTVLNGSFGHVTGTQTFRGAGGTGAKDGFLFAL
ELAPSVILSLGIIAITDGLGGLRAAQQLMTPILKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAA
WQTSGSAIITNYFSSGVAVFAFLGTSVIIPLVVILLFKFIGANLLRIWINIEERRHPAQGAQS

Sequences:

>Translated_223_residues
MAQQVDGAAMPLDTEKVGIKGYLAFFLTIIFFSGVFSGSEGWWRVFDFTVLNGSFGHVTGTQTFRGAGGTGAKDGFLFAL
ELAPSVILSLGIIAITDGLGGLRAAQQLMTPILKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAA
WQTSGSAIITNYFSSGVAVFAFLGTSVIIPLVVILLFKFIGANLLRIWINIEERRHPAQGAQS
>Mature_222_residues
AQQVDGAAMPLDTEKVGIKGYLAFFLTIIFFSGVFSGSEGWWRVFDFTVLNGSFGHVTGTQTFRGAGGTGAKDGFLFALE
LAPSVILSLGIIAITDGLGGLRAAQQLMTPILKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAW
QTSGSAIITNYFSSGVAVFAFLGTSVIIPLVVILLFKFIGANLLRIWINIEERRHPAQGAQS

Specific function: Unknown

COG id: COG3314

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082423, Length=227, Percent_Identity=84.5814977973568, Blast_Score=370, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011642 [H]

Pfam domain/function: PF07670 Gate [H]

EC number: NA

Molecular weight: Translated: 23671; Mature: 23540

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQVDGAAMPLDTEKVGIKGYLAFFLTIIFFSGVFSGSEGWWRVFDFTVLNGSFGHVTG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC
TQTFRGAGGTGAKDGFLFALELAPSVILSLGIIAITDGLGGLRAAQQLMTPILKPLLGIP
CCEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCC
GICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAWQTSGSAIITNYFSSGVAVF
CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHH
AFLGTSVIIPLVVILLFKFIGANLLRIWINIEERRHPAQGAQS
HHHHHHHHHHHHHHHHHHHHCHHEEEEEEEHHHHCCCCCCCCC
>Mature Secondary Structure 
AQQVDGAAMPLDTEKVGIKGYLAFFLTIIFFSGVFSGSEGWWRVFDFTVLNGSFGHVTG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCC
TQTFRGAGGTGAKDGFLFALELAPSVILSLGIIAITDGLGGLRAAQQLMTPILKPLLGIP
CCEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCC
GICSLALIANLQNTDAAAGMTKELAQEGEITERDKVIFAAWQTSGSAIITNYFSSGVAVF
CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHH
AFLGTSVIIPLVVILLFKFIGANLLRIWINIEERRHPAQGAQS
HHHHHHHHHHHHHHHHHHHHCHHEEEEEEEHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]