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The map label for this gene is yneC [H]

Identifier: 39546390

GI number: 39546390

Start: 4289106

End: 4289399

Strand: Direct

Name: yneC [H]

Synonym: STM4079.S

Alternate gene names: 39546390

Gene position: 4289106-4289399 (Clockwise)

Preceding gene: 16767344

Following gene: 16767346

Centisome position: 88.3

GC content: 43.88

Gene sequence:

>294_bases
ATGATGCACGTTACGCTGGTTGAAATTAACGTTCATGATGACAAGGTTGAACAATTTATCGATGTTTTTCGGCAGAATCA
TCTGGGCTCAATTAAAGAGCCGGGTAACTTGCGTTTTGATGTTCTGCAGGATCCGCAGGTGCTTACGCGATTTTATATTT
ATGAAGCCTACGTTGATGAACAGGCCGTCGCTTTTCACAAGACAACGCCACACTACAAAACTTGCGTGGAGCAGCTTGAA
CCGTTGATGACCGGTCCGCGGACAAAAAAAGTTTTTATGGGTTTGATGCCTTAA

Upstream 100 bases:

>100_bases
TTTTTGAGTGAGAAAAGTTAAATGAGATCGCTTCCCCATCTTTTACCGATGCGAGGAGATGGGGATGACTGTTATTTTAT
TTGGAATAATCAGGGGGTTA

Downstream 100 bases:

>100_bases
GGAGCGCTCATGAACAGCCAGTTTGCCGGATTAACGCGCGAAGCATGTGTGGCATTGTTAGCGTCATATCCGCTTAGTGT
GGGTATTCTGGCAGGGCAGT

Product: autoinducer-2 (AI-2) modifying protein LsrG

Products: NA

Alternate protein names: AI-2-degrading protein lsrG [H]

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MMHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDEQAVAFHKTTPHYKTCVEQLE
PLMTGPRTKKVFMGLMP

Sequences:

>Translated_97_residues
MMHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDEQAVAFHKTTPHYKTCVEQLE
PLMTGPRTKKVFMGLMP
>Mature_97_residues
MMHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDEQAVAFHKTTPHYKTCVEQLE
PLMTGPRTKKVFMGLMP

Specific function: Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the cleavage of phosphorylated 4,5- dihydroxy-2,3-pentanedione (P-DPD) to 2-phosphoglycolic acid (PG) and another

COG id: COG1359

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lsrG family [H]

Homologues:

Organism=Escherichia coli, GI1787797, Length=96, Percent_Identity=80.2083333333333, Blast_Score=168, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007138
- InterPro:   IPR011008 [H]

Pfam domain/function: PF03992 ABM [H]

EC number: NA

Molecular weight: Translated: 11365; Mature: 11365

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDE
CEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
QAVAFHKTTPHYKTCVEQLEPLMTGPRTKKVFMGLMP
CCEEEECCCCHHHHHHHHHHHHHCCCCCHHHEECCCC
>Mature Secondary Structure
MMHVTLVEINVHDDKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDE
CEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
QAVAFHKTTPHYKTCVEQLEPLMTGPRTKKVFMGLMP
CCEEEECCCCHHHHHHHHHHHHHCCCCCHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA