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The map label for this gene is 39546377

Identifier: 39546377

GI number: 39546377

Start: 4052340

End: 4053275

Strand: Direct

Name: 39546377

Synonym: STM3846.s

Alternate gene names: NA

Gene position: 4052340-4053275 (Clockwise)

Preceding gene: 16767129

Following gene: 16767131

Centisome position: 83.43

GC content: 30.56

Gene sequence:

>936_bases
ATGGACATATTACAGCATATTTCAGATTTACTATTAACCAAGAAAAGTGAAATCATTTCCTTTTCATTGACGGCACCTTA
TCGCTATAAAATATATAAAATTGCAAAAAGAAACTCAGATAAGAAGAGAACTATTGCTCATCCTTCGAAAGAACTAAAAT
TTATACAACGTGAAATTACTGAGTATTTAACCGATAAATTACCCGTTCATGAATGCGCATTTGCATATAAAAAGGGCAGT
AGCATTAAGACCAACGCTCAAGTTCATCTTCATACAAAATACTTGTTGAAGATGGATTTTGAGAATTTTTTCCCTAGCAT
AACACCACGTCTATTTTTCTCAAAGTTACGACTTGCAAATATTGATTTAACTGCAGATGATAAAGTACTACTTGAGAATA
TATTATTCTTCAAATCCAAGAGAAATAGTAATTTAAGATTAAGTATTGGAGCACCAAGCTCACCTTTAATATCAAATTTT
GTGATGTACTTTTGGGATATTGAGGTTCAAGAGATATGCTCTAAAATAGGCGTTAACTATACTCGTTATGCTGATGATTT
AACCTTTTCAACAAATAATAAAGATGTTTTGTTTGATATACCTGACATGCTTGAAAACGTACTGCCTAAATATTCTTTAG
GTAGGATTAGAATCAATCATGAAAAAACAGTGTTTTCTTCAAAAGGACATAACCGTCACGTTACTGGTATAACTCTAACA
AACGATAACAAATTATCCATAGGTAGAGAAAGGAAAAGAAAAATCTCTGCCATGATCCATCATTTTATAAATGGGAAATT
ATCTACTGACGAATGCAATAAATTAGTCGGGCTACTTGCATTTGCTAAAAATATTGAGCCTTCGTTTTATAAAAGCATGG
TCATTAAATATGGATCTGATAATATTTATAAATTACAAAAACAAAAAGACAAATAA

Upstream 100 bases:

>100_bases
GACAATCTTTTGTAACATTAACCGATCCATTATCAAAACGAAGAATTACAGCGCTGCGTCAAATAATAGCAAAAAAAGAA
ATGGCTGAGGAGATTAATTA

Downstream 100 bases:

>100_bases
TTTCTGCTGCACTTTTATAGACACCAGTGTTTTGTTGATTATGCCCAGAACAACTTGGAATAAGTTTTCCTAAGCGTATT
ACATTATACGCTTGGCCTAA

Product: reverse transcriptase

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREITEYLTDKLPVHECAFAYKKGS
SIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLANIDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNF
VMYFWDIEVQEICSKIGVNYTRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLT
NDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMVIKYGSDNIYKLQKQKDK

Sequences:

>Translated_311_residues
MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREITEYLTDKLPVHECAFAYKKGS
SIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLANIDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNF
VMYFWDIEVQEICSKIGVNYTRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLT
NDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMVIKYGSDNIYKLQKQKDK
>Mature_311_residues
MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREITEYLTDKLPVHECAFAYKKGS
SIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLANIDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNF
VMYFWDIEVQEICSKIGVNYTRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLT
NDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMVIKYGSDNIYKLQKQKDK

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 36071; Mature: 36071

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREIT
CCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHH
EYLTDKLPVHECAFAYKKGSSIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLAN
HHHHCCCCHHHHHHHHHCCCCEECCCEEEEEEEEEEEECHHHHCCCCCHHHHHHHHHHEE
IDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNFVMYFWDIEVQEICSKIGVNY
CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHCCCE
TRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLT
EEECCCEEEECCCCEEEEECHHHHHHHCCCCCCCEEEECCCCEEECCCCCCEEEEEEEEE
NDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMVIKYGSD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCC
NIYKLQKQKDK
CEEECCCCCCC
>Mature Secondary Structure
MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREIT
CCHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHH
EYLTDKLPVHECAFAYKKGSSIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLAN
HHHHCCCCHHHHHHHHHCCCCEECCCEEEEEEEEEEEECHHHHCCCCCHHHHHHHHHHEE
IDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNFVMYFWDIEVQEICSKIGVNY
CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHCCCE
TRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLT
EEECCCEEEECCCCEEEEECHHHHHHHCCCCCCCEEEECCCCEEECCCCCCEEEEEEEEE
NDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMVIKYGSD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCC
NIYKLQKQKDK
CEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]