Click here to switch to the map view.

The map label for this gene is ycgB [H]

Identifier: 39546326

GI number: 39546326

Start: 1904316

End: 1905842

Strand: Direct

Name: ycgB [H]

Synonym: STM1804.S

Alternate gene names: 39546326

Gene position: 1904316-1905842 (Clockwise)

Preceding gene: 16765142

Following gene: 16765147

Centisome position: 39.2

GC content: 49.84

Gene sequence:

>1527_bases
ATGATTGATTCCATGAACAAGGACACCACACGTTTGAGCGATGGACCCGACTGGACATTTGAGCTGCTGGATGTCTATCT
GGCAGAGATAGACCGCGTGGCGAAGCTCTACCAACTGGATACTTACCCGCACCAAATTGAAGTCATCACTTCCGAACAGA
TGATGGACGCCTACTCCAGCGTCGGGATGCCGATCAACTATCCGCACTGGTCGTTTGGCAAAAAGTTCATTGAGACGGAA
CGTCTGTATAAGCATGGTCAACAAGGACTGGCTTATGAAATTGTGATCAACTCTAATCCCTGCATTGCCTACCTGATGGA
AGAGAACACCATCACCATGCAAGCGCTGGTCATGGCGCACGCCTGTTACGGCCACAACTCCTTTTTTAAAAATAATTATC
TCTTCCGGAGCTGGACGGATGCCAGCTCTATCGTCGATTACCTGATTTTCGCCCGAAATTACATTACCCGCTGTGAAGAA
CGCTACGGAGTGGATGAAGTAGAAAAACTGCTCGACTCCTGCCACGCGCTGATGAATTACGGCGTCGATCGCTATAAGCG
CCCGCAGAAAATCTCGTTGCAGGAAGAGAAAGCGCGACAAAAAAGCCGGGAAGAGTATCTACAAAGCCAGGTGAATATGC
TGTGGCGCACGCTGCCAAAACGCGAAGAAGAAAAAACGGTCGCCGAAGCACGCCGCTTTCCCGCTGAACCGCAGGAAAAC
CTGCTCTATTTTATGGAGAAAAACGCCCCGTTGCTCGAGCCGTGGCAGCGCGAAATTCTGCGCATCGTGCGTAAAGTCAG
CCAGTATTTTTATCCGCAGAAACAGACGCAGGTCATGAACGAGGGCTGGGCGACCTTCTGGCACTACACCATCCTGAACC
ATCTGTATGATGAAGGCAAAGTGACGGAACGCTTTATGCTGGAGTTTTTACACAGCCATACCAATGTCGTATTTCAGCCG
CCCTATAATAGCCCCTGGTATAGCGGAATTAACCCCTATGCGCTCGGCTTTGCCATGTTCCAGGATATCAAACGTATTTG
TCAGTCCCCCACGGATGAAGATAAATACTGGTTTCCGGATATTGCCGGTTCCGACTGGCTGGAAACGCTGCACTTCGCCA
TGCGCGATTTTAAAGATGAAAGCTTTATCAGCCAGTTCCTGTCGCCAAAAGTGATGCGTGATTTCCGTTTCTTCACGGTA
CTTGATGATGACAGGCATAATTATCTGGAGATCTCCGCCATTCATAACGAAGAAGGTTATCGGGAGATTCGATCAAAACT
GTCGTCACAGTATAACCTGAGCAATCTGGAGCCGAATATTCAGGTCTGGAATGTGGATTTACGCGGCGACAGATCGCTGA
CGTTGCGTTATATCCCGCATAACCGCGCACCGCTGGATAAAGGCCGCAAAGAGGTGCTGAAACATGTGCATCGGTTATGG
GGCTTTGATGTGATGCTGGAGCAACAAAATGAGGATGGCAGCGTAGAACTGCTGGAGCGTTGTCCGCCGCGCATGAACAT
GCTGTAA

Upstream 100 bases:

>100_bases
AGTTTTCACGATCAAGTCGTTTTTTAACATGGTGTTCTATGCTTGAAAGGAGGCGCTCCATACAGAGAGCGTCGCCAACA
ATGAGGGTGCGCGAATGGCA

Downstream 100 bases:

>100_bases
TCGAGATGCTGCCCGGTAGTGTTTGCGCTTACCGGGCATCGCGGGATTATCGTCCCTGAATCGCTAAATCGCCGGGCAGA
TTTTTCTGCATCCGATGCCA

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETE
RLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRCEE
RYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRFPAEPQEN
LLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQP
PYNSPWYSGINPYALGFAMFQDIKRICQSPTDEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTV
LDDDRHNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLRGDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLW
GFDVMLEQQNEDGSVELLERCPPRMNML

Sequences:

>Translated_508_residues
MIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETE
RLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRCEE
RYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRFPAEPQEN
LLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQP
PYNSPWYSGINPYALGFAMFQDIKRICQSPTDEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTV
LDDDRHNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLRGDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLW
GFDVMLEQQNEDGSVELLERCPPRMNML
>Mature_508_residues
MIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETE
RLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRCEE
RYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRFPAEPQEN
LLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQP
PYNSPWYSGINPYALGFAMFQDIKRICQSPTDEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTV
LDDDRHNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLRGDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLW
GFDVMLEQQNEDGSVELLERCPPRMNML

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=507, Percent_Identity=96.8441814595661, Blast_Score=1040, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 60540; Mature: 60540

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTYPHQIEVITSEQMMDAYSS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH
VGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAH
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHH
ACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRCEERYGVDEVEKLLDSCHALMNY
HHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRFPAEPQEN
CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHC
LLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCC
VTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTDEDKYWFPD
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCC
IAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGY
CCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHCEEEEEEECCCCCEEEEEEECCCHHH
REIRSKLSSQYNLSNLEPNIQVWNVDLRGDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLW
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
GFDVMLEQQNEDGSVELLERCPPRMNML
CCCEEEECCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure
MIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTYPHQIEVITSEQMMDAYSS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHH
VGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAH
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHH
ACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRCEERYGVDEVEKLLDSCHALMNY
HHHCCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKTVAEARRFPAEPQEN
CHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHC
LLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCC
VTERFMLEFLHSHTNVVFQPPYNSPWYSGINPYALGFAMFQDIKRICQSPTDEDKYWFPD
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCC
IAGSDWLETLHFAMRDFKDESFISQFLSPKVMRDFRFFTVLDDDRHNYLEISAIHNEEGY
CCCHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHCEEEEEEECCCCCEEEEEEECCCHHH
REIRSKLSSQYNLSNLEPNIQVWNVDLRGDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLW
HHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
GFDVMLEQQNEDGSVELLERCPPRMNML
CCCEEEECCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]