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The map label for this gene is sodC [H]

Identifier: 38234853

GI number: 38234853

Start: 2420959

End: 2421561

Strand: Reverse

Name: sodC [H]

Synonym: DIP2319

Alternate gene names: 38234853

Gene position: 2421561-2420959 (Counterclockwise)

Preceding gene: 38234854

Following gene: 38234852

Centisome position: 97.3

GC content: 55.72

Gene sequence:

>603_bases
ATGCTGGGCGTAGGATTTGCCCTAGCAAGTGCACTCGCAGCTTGCGGCAGTGGTGAGCAAACTGAAAATGCCTCGATGAA
TGCATCGGCAAGTGAGACGTCGTCAGGCGAGATGGGAACGCCATTTGCTACTGCGAAGCTCGTCACGCAGAAGGGCGAAG
ACGCCGGCACGGTTACTTTTACAACCACACAGGCTGGAACTGAAATCAACGTGGATGCAAAGGGGCTTGAGCCAGGGTTC
CATGGTTTCCATGTGCACGATAAGGGTAAGTGTGAAGGTGACTTCAAGTCCGCTGGAGGTCATTTAAGCGGCCCAGATCA
TTCCCATGGCTCCGATCATTCTGGCGGATACCATCCACACGCTGGTGATTTGCCCTCACTTTTGGCCGCAAAGGATGGCA
CTGCAAAGTTGACGGTTACAACCGACGCCCTGACCCCCGAGCTGCTTCTCGGCACCGATGGCGCCAGCCTCATCGTGCAC
GAAGGTCGCGATAACTTTGCCAACATCCCCGAGCGCTATGCGCCAGAAGGCCCTGATCAGGACACGTTGAAGACCGGTGA
CGCTGGTGCTCGCTTTGCATGCGGTGTGATCGAAGCAAAATAA

Upstream 100 bases:

>100_bases
TTACTGTCAAGTGGCATGGTGGGATAGCTGACGTAATGAAAGGCCAACAATGAACACTCGTGCAGTCTTTGCGCTTTCCC
CACGATCAAAAAAGCTCACA

Downstream 100 bases:

>100_bases
CTCCTAGGTGAGCAATTTTTGTACCTTAAGCACTGTTTTTGAGGGGGGCGTCCTGCGGTTTTGTGGCCTTAGGGTAGCAT
GCTGTGTTCTATGGGCACTT

Product: putative copper zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLGVGFALASALAACGSGEQTENASMNASASETSSGEMGTPFATAKLVTQKGEDAGTVTFTTTQAGTEINVDAKGLEPGF
HGFHVHDKGKCEGDFKSAGGHLSGPDHSHGSDHSGGYHPHAGDLPSLLAAKDGTAKLTVTTDALTPELLLGTDGASLIVH
EGRDNFANIPERYAPEGPDQDTLKTGDAGARFACGVIEAK

Sequences:

>Translated_200_residues
MLGVGFALASALAACGSGEQTENASMNASASETSSGEMGTPFATAKLVTQKGEDAGTVTFTTTQAGTEINVDAKGLEPGF
HGFHVHDKGKCEGDFKSAGGHLSGPDHSHGSDHSGGYHPHAGDLPSLLAAKDGTAKLTVTTDALTPELLLGTDGASLIVH
EGRDNFANIPERYAPEGPDQDTLKTGDAGARFACGVIEAK
>Mature_200_residues
MLGVGFALASALAACGSGEQTENASMNASASETSSGEMGTPFATAKLVTQKGEDAGTVTFTTTQAGTEINVDAKGLEPGF
HGFHVHDKGKCEGDFKSAGGHLSGPDHSHGSDHSGGYHPHAGDLPSLLAAKDGTAKLTVTTDALTPELLLGTDGASLIVH
EGRDNFANIPERYAPEGPDQDTLKTGDAGARFACGVIEAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=160, Percent_Identity=31.875, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787934, Length=207, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17537871, Length=127, Percent_Identity=39.3700787401575, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71981876, Length=154, Percent_Identity=37.012987012987, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71981879, Length=154, Percent_Identity=37.012987012987, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI85725006, Length=200, Percent_Identity=33.5, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI45551081, Length=200, Percent_Identity=33.5, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24652737, Length=200, Percent_Identity=33.5, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007680, Length=197, Percent_Identity=33.502538071066, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20292; Mature: 20292

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGVGFALASALAACGSGEQTENASMNASASETSSGEMGTPFATAKLVTQKGEDAGTVTF
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
TTTQAGTEINVDAKGLEPGFHGFHVHDKGKCEGDFKSAGGHLSGPDHSHGSDHSGGYHPH
EEECCCCEEECCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
AGDLPSLLAAKDGTAKLTVTTDALTPELLLGTDGASLIVHEGRDNFANIPERYAPEGPDQ
CCCCCHHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCHHHCCCCCCC
DTLKTGDAGARFACGVIEAK
CCEECCCCCCEEEEEEEECC
>Mature Secondary Structure
MLGVGFALASALAACGSGEQTENASMNASASETSSGEMGTPFATAKLVTQKGEDAGTVTF
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEE
TTTQAGTEINVDAKGLEPGFHGFHVHDKGKCEGDFKSAGGHLSGPDHSHGSDHSGGYHPH
EEECCCCEEECCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
AGDLPSLLAAKDGTAKLTVTTDALTPELLLGTDGASLIVHEGRDNFANIPERYAPEGPDQ
CCCCCHHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCHHHCCCCCCC
DTLKTGDAGARFACGVIEAK
CCEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11549243 [H]