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The map label for this gene is ssb1 [H]

Identifier: 38234825

GI number: 38234825

Start: 2387462

End: 2388043

Strand: Reverse

Name: ssb1 [H]

Synonym: DIP2290

Alternate gene names: 38234825

Gene position: 2388043-2387462 (Counterclockwise)

Preceding gene: 161598671

Following gene: 38234824

Centisome position: 95.96

GC content: 61.0

Gene sequence:

>582_bases
ATGGCACAAGGAGATGTCAACATAACCGTTGTCGGCAACCTCGTTGCTGACCCGGAGCTTCGCTTCACCCCTAGCGGTGC
AGCGGTGGCAAACTTCCGCATTGCCTCCACCCCACGTCGTTACGACTCTCAAACGAACCAGTGGGTAGACGGCGAAGCCT
TGTTCCTGCAGTGCAACATTTGGCGCCAAGCTGCCGAAAACGTCGCAGAATCCCTGACCAAGGGCATGCGCGTGATCGTC
ACTGGCCGTTTGCGTCAACGCTCCTACGAAACCCGTGAGGGCGAAAAGCGCAGCGTCATGGAGCTTGAGGTCGACGAAGT
CGGCCCATCCCTACGCTACGCAGCAGCAAGCGTGAACCGTAACCCTCGCGAGGGTGGAAACGGCGGAGGAAACTTCGGCG
GCTCCCAGGGTGGTTTCGGCGGAAACACCGGAGGCAACTCAGGTGGCGGATTCGGCGCTCCTCAAGGTGGCTTCGGAGGC
GGCCCGCAGAACTCCCAGAGTGCTGCACCAGCCAACGATCCATGGAGCAGTGCCCCGCAAGCAGGTGGATTCGGCGGTGC
GGAGCAAGATCCACCGTTCTAA

Upstream 100 bases:

>100_bases
AGCACGAATCAAACTAGCGCACAGCGAAGAAACCTCGCTTACCGCGCACAATCACACTGAACGCGTTTAACCAGTTCGGT
GTTGTACAGAAAGGCAGAAC

Downstream 100 bases:

>100_bases
GCCACTTATAACGGCGAATCTCTTTGCACCACATATCAACTTTTAATCAAACTTCACCGAGCTGCTTCGGTTCCCACCAC
ACAAGTGATGAGAAATCGGG

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAQGDVNITVVGNLVADPELRFTPSGAAVANFRIASTPRRYDSQTNQWVDGEALFLQCNIWRQAAENVAESLTKGMRVIV
TGRLRQRSYETREGEKRSVMELEVDEVGPSLRYAAASVNRNPREGGNGGGNFGGSQGGFGGNTGGNSGGGFGAPQGGFGG
GPQNSQSAAPANDPWSSAPQAGGFGGAEQDPPF

Sequences:

>Translated_193_residues
MAQGDVNITVVGNLVADPELRFTPSGAAVANFRIASTPRRYDSQTNQWVDGEALFLQCNIWRQAAENVAESLTKGMRVIV
TGRLRQRSYETREGEKRSVMELEVDEVGPSLRYAAASVNRNPREGGNGGGNFGGSQGGFGGNTGGNSGGGFGAPQGGFGG
GPQNSQSAAPANDPWSSAPQAGGFGGAEQDPPF
>Mature_192_residues
AQGDVNITVVGNLVADPELRFTPSGAAVANFRIASTPRRYDSQTNQWVDGEALFLQCNIWRQAAENVAESLTKGMRVIVT
GRLRQRSYETREGEKRSVMELEVDEVGPSLRYAAASVNRNPREGGNGGGNFGGSQGGFGGNTGGNSGGGFGAPQGGFGGG
PQNSQSAAPANDPWSSAPQAGGFGGAEQDPPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=179, Percent_Identity=32.4022346368715, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 20022; Mature: 19891

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGDVNITVVGNLVADPELRFTPSGAAVANFRIASTPRRYDSQTNQWVDGEALFLQCNI
CCCCCEEEEEEECEECCCCEEECCCCCEEEEEEECCCCHHHCCCCCCEECCCEEEEEEHH
WRQAAENVAESLTKGMRVIVTGRLRQRSYETREGEKRSVMELEVDEVGPSLRYAAASVNR
HHHHHHHHHHHHHCCEEEEEECHHHHHHCCCCCCCCCCEEEEEHHHCCCCHHHHHHHCCC
NPREGGNGGGNFGGSQGGFGGNTGGNSGGGFGAPQGGFGGGPQNSQSAAPANDPWSSAPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGGFGGAEQDPPF
CCCCCCCCCCCCC
>Mature Secondary Structure 
AQGDVNITVVGNLVADPELRFTPSGAAVANFRIASTPRRYDSQTNQWVDGEALFLQCNI
CCCCEEEEEEECEECCCCEEECCCCCEEEEEEECCCCHHHCCCCCCEECCCEEEEEEHH
WRQAAENVAESLTKGMRVIVTGRLRQRSYETREGEKRSVMELEVDEVGPSLRYAAASVNR
HHHHHHHHHHHHHCCEEEEEECHHHHHHCCCCCCCCCCEEEEEHHHCCCCHHHHHHHCCC
NPREGGNGGGNFGGSQGGFGGNTGGNSGGGFGAPQGGFGGGPQNSQSAAPANDPWSSAPQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGGFGGAEQDPPF
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]