| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is csp1 [H]
Identifier: 38234734
GI number: 38234734
Start: 2276087
End: 2278003
Strand: Reverse
Name: csp1 [H]
Synonym: DIP2193
Alternate gene names: 38234734
Gene position: 2278003-2276087 (Counterclockwise)
Preceding gene: 38234735
Following gene: 38234733
Centisome position: 91.54
GC content: 57.02
Gene sequence:
>1917_bases ATGCGCGACACCGCATTCCGCAAGCGTGGTTCCCTCTGGATTGCCACCGCCGCCGTGCCCGTTGCTTTGGCAATGGGTGC CTCGGTTATGGTTCCAGCCAACGCTCAAAGCTCAGGCAGCTCAGGGCTGCTGGGCGGTCAAACCGATTACCTTAACCAGC AAGGCGTGAAGCGCACCCCAGTGCGCACTGATCACCCTAAGGTTGATGGCCTACCTGCTGGCGTATCCGTCGATCGTGTG GAGTGGCTCGGTGGCCGTCGTGTTGCCGTCTACGTGAACACTCCTTCTATGGGCCAGGTGCAGGTTCAAATACTCTTGGC TCGCGACTGGTTCCAGGATCCTAACCGCAGCTTCCCATCTGTGTGGGCTCTTGATGGCCTGCGCGCTACCGATGTGGAAA ATGGCTGGACCATTGGTACCAACATCGAGCAGTTCTACTCTGATAAGAACGTGAACGTGATCTTGCCGGTTGGCGGCCAA TCTTCTTTCTATTCTGACTGGCAGCAGCCCAACAATGGCAAGCACTACAAGTGGGAAACATTCCTGACTAATGAGCTCGT CCCTGTGCTCAAGAATGGTTTCCGCACTAACGACGACCGCGCTGTCGTCGGCCTGTCTATGGGCGGTACGGCTGCCATCA ACTTGGCTGAGCGTCGCCCTGACCTGTTTAAGTTCGTTGGCTCCTTCTCTGGATACTTGGATACCACCTCGATTGGTATG CCAGCTGCTATCCGGGCTGCGCAAAAAGACGCCGGTGGTTACGACAGCACCGCTATGTGGGGACCTGACGGTAGCCAAGA TTGGATCGACCACGATCCTAAGCTCGGTGTTGAGGCACTTCGTGGCATTACCACCTATGTTTCCGCGGGTTCCGGACGCG ATGACTTCGGTGAGCCAGGTTCGGTTGCTAACAAGAAGGGTAGCTACGCGGGTATCGGCCTTGAGGTGATCTCTCGTATG ACCACCGAGACCTTCGTTGCTCATGCCCGTCGCGCAGGCGTTGAGGTTCAGGCATTCTTCCGTCCATCGGGTGTGCATGA CTGGCCTTACTGGCAGTTTGAGATGACTCAGGCATGGCCATACATGGCTAATGCGCTGGGCTTGTCGGAATCTGATCGCG GCGCATCGTGTGCTCCTATCGGAGCCATTGCAGACGCTGTTAAGTCCGGAAAGGTGGGATCGTGCGTGAACAACGAGTAC GACGTCCCAGGCGGTAAGGTTGAGGACTTTGTCAGCGGTCGCGCTTACTGGTCACCATCGACTGGAGCACATGCCCTCTA CGGTCGTATCAACGCCCGCTACAGCGAAATGGGCGGCCCACAGTCGTGGCTGGGATTCCCCATCAGCAGCGAGTTCGCCA TCAAGGACAACGCTCGCGTGGTGCAGTTCCAAAACGGCAACATCTATTGGTCCCCTCAGCGTGGCGCTATTGCCGTGCCT AAGGACATTGTGGATAAGTGGGGCGAGCAGCAGTGGGAGAATGGCTTCTTGGGCTTCCCTGTCGCTGAGGCTAAGGAAGT AGCTGGCGGCTTTATCCAAGAGTTCGAGGGCGGCCTCGTGGTGCGTACCAAGGACAACAAGAACCAGTGGCTGCGCGGCG AGATCGCTAAGAAGTACCGTGAGATGAAGACCGCTGAGTCTGAGTTGGGCTTCCCAGTCTCTGATGAGATCAAGATCAAC GGCGGTGCTTTCCAGCAGTTCGAGCACGGCAACATCTACTGGTCTGCTGCTACCGGAGCGCACTTCATCCGCAAGGGTGA CATCTTCAACACGTGGGGTGTGAAGAAGTGGGAACAGGGTGAGTTGGGCTTCCCTGTGACCGACCACACTCAAATCCCTG CTGGTGGCGAGGAAATCACCTTCCAGCACGGTAAGATTTCGCAGGTCAATGGCGTTATCCGTGAGGAGCGTCGCTAA
Upstream 100 bases:
>100_bases CGGACGAATACCCGATGGGACTTGGGAGCGTTTCACAGGAGGGGAACCTGTGAAGCCTCGTGGGTTTTGTTGGCGTCCCC TGCACTCAGGAGAATTTTTT
Downstream 100 bases:
>100_bases TGCGTAGGGCCGTAGGTCTTGCGGCTGTCGCATGTCTTGCGCTGGCTGGTTGCGGTGAAGCAACGGTGACCGACGAGGAG CAGAGCACCTCGGTGGCGCC
Product: putative secreted antigen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MRDTAFRKRGSLWIATAAVPVALAMGASVMVPANAQSSGSSGLLGGQTDYLNQQGVKRTPVRTDHPKVDGLPAGVSVDRV EWLGGRRVAVYVNTPSMGQVQVQILLARDWFQDPNRSFPSVWALDGLRATDVENGWTIGTNIEQFYSDKNVNVILPVGGQ SSFYSDWQQPNNGKHYKWETFLTNELVPVLKNGFRTNDDRAVVGLSMGGTAAINLAERRPDLFKFVGSFSGYLDTTSIGM PAAIRAAQKDAGGYDSTAMWGPDGSQDWIDHDPKLGVEALRGITTYVSAGSGRDDFGEPGSVANKKGSYAGIGLEVISRM TTETFVAHARRAGVEVQAFFRPSGVHDWPYWQFEMTQAWPYMANALGLSESDRGASCAPIGAIADAVKSGKVGSCVNNEY DVPGGKVEDFVSGRAYWSPSTGAHALYGRINARYSEMGGPQSWLGFPISSEFAIKDNARVVQFQNGNIYWSPQRGAIAVP KDIVDKWGEQQWENGFLGFPVAEAKEVAGGFIQEFEGGLVVRTKDNKNQWLRGEIAKKYREMKTAESELGFPVSDEIKIN GGAFQQFEHGNIYWSAATGAHFIRKGDIFNTWGVKKWEQGELGFPVTDHTQIPAGGEEITFQHGKISQVNGVIREERR
Sequences:
>Translated_638_residues MRDTAFRKRGSLWIATAAVPVALAMGASVMVPANAQSSGSSGLLGGQTDYLNQQGVKRTPVRTDHPKVDGLPAGVSVDRV EWLGGRRVAVYVNTPSMGQVQVQILLARDWFQDPNRSFPSVWALDGLRATDVENGWTIGTNIEQFYSDKNVNVILPVGGQ SSFYSDWQQPNNGKHYKWETFLTNELVPVLKNGFRTNDDRAVVGLSMGGTAAINLAERRPDLFKFVGSFSGYLDTTSIGM PAAIRAAQKDAGGYDSTAMWGPDGSQDWIDHDPKLGVEALRGITTYVSAGSGRDDFGEPGSVANKKGSYAGIGLEVISRM TTETFVAHARRAGVEVQAFFRPSGVHDWPYWQFEMTQAWPYMANALGLSESDRGASCAPIGAIADAVKSGKVGSCVNNEY DVPGGKVEDFVSGRAYWSPSTGAHALYGRINARYSEMGGPQSWLGFPISSEFAIKDNARVVQFQNGNIYWSPQRGAIAVP KDIVDKWGEQQWENGFLGFPVAEAKEVAGGFIQEFEGGLVVRTKDNKNQWLRGEIAKKYREMKTAESELGFPVSDEIKIN GGAFQQFEHGNIYWSAATGAHFIRKGDIFNTWGVKKWEQGELGFPVTDHTQIPAGGEEITFQHGKISQVNGVIREERR >Mature_638_residues MRDTAFRKRGSLWIATAAVPVALAMGASVMVPANAQSSGSSGLLGGQTDYLNQQGVKRTPVRTDHPKVDGLPAGVSVDRV EWLGGRRVAVYVNTPSMGQVQVQILLARDWFQDPNRSFPSVWALDGLRATDVENGWTIGTNIEQFYSDKNVNVILPVGGQ SSFYSDWQQPNNGKHYKWETFLTNELVPVLKNGFRTNDDRAVVGLSMGGTAAINLAERRPDLFKFVGSFSGYLDTTSIGM PAAIRAAQKDAGGYDSTAMWGPDGSQDWIDHDPKLGVEALRGITTYVSAGSGRDDFGEPGSVANKKGSYAGIGLEVISRM TTETFVAHARRAGVEVQAFFRPSGVHDWPYWQFEMTQAWPYMANALGLSESDRGASCAPIGAIADAVKSGKVGSCVNNEY DVPGGKVEDFVSGRAYWSPSTGAHALYGRINARYSEMGGPQSWLGFPISSEFAIKDNARVVQFQNGNIYWSPQRGAIAVP KDIVDKWGEQQWENGFLGFPVAEAKEVAGGFIQEFEGGLVVRTKDNKNQWLRGEIAKKYREMKTAESELGFPVSDEIKIN GGAFQQFEHGNIYWSAATGAHFIRKGDIFNTWGVKKWEQGELGFPVTDHTQIPAGGEEITFQHGKISQVNGVIREERR
Specific function: One of the two major secreted proteins [H]
COG id: COG0627
COG function: function code R; Predicted esterase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000801 - InterPro: IPR013207 [H]
Pfam domain/function: PF00756 Esterase; PF08310 LGFP [H]
EC number: NA
Molecular weight: Translated: 69766; Mature: 69766
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDTAFRKRGSLWIATAAVPVALAMGASVMVPANAQSSGSSGLLGGQTDYLNQQGVKRTP CCCCHHHCCCCEEEEHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCC VRTDHPKVDGLPAGVSVDRVEWLGGRRVAVYVNTPSMGQVQVQILLARDWFQDPNRSFPS CCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEEEHHHCCCCCCCCCC VWALDGLRATDVENGWTIGTNIEQFYSDKNVNVILPVGGQSSFYSDWQQPNNGKHYKWET EEEECCCEECCCCCCEEECCCHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEE FLTNELVPVLKNGFRTNDDRAVVGLSMGGTAAINLAERRPDLFKFVGSFSGYLDTTSIGM EHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEHHHCCHHHHHHHHHCCCCCCCCCCC PAAIRAAQKDAGGYDSTAMWGPDGSQDWIDHDPKLGVEALRGITTYVSAGSGRDDFGEPG CHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCC SVANKKGSYAGIGLEVISRMTTETFVAHARRAGVEVQAFFRPSGVHDWPYWQFEMTQAWP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCC YMANALGLSESDRGASCAPIGAIADAVKSGKVGSCVNNEYDVPGGKVEDFVSGRAYWSPS HHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCC TGAHALYGRINARYSEMGGPQSWLGFPISSEFAIKDNARVVQFQNGNIYWSPQRGAIAVP CCCEEEEEECCCHHHHCCCCCHHCCCCCCCCEEECCCCEEEEEECCCEEECCCCCCEECC KDIVDKWGEQQWENGFLGFPVAEAKEVAGGFIQEFEGGLVVRTKDNKNQWLRGEIAKKYR HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH EMKTAESELGFPVSDEIKINGGAFQQFEHGNIYWSAATGAHFIRKGDIFNTWGVKKWEQG HHHHHHHHCCCCCCCCEEECCCCEEEEECCCEEEEECCCCEEEECCCEEECCCCCCCCCC ELGFPVTDHTQIPAGGEEITFQHGKISQVNGVIREERR CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCC >Mature Secondary Structure MRDTAFRKRGSLWIATAAVPVALAMGASVMVPANAQSSGSSGLLGGQTDYLNQQGVKRTP CCCCHHHCCCCEEEEHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCC VRTDHPKVDGLPAGVSVDRVEWLGGRRVAVYVNTPSMGQVQVQILLARDWFQDPNRSFPS CCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCEEEEEEEEHHHCCCCCCCCCC VWALDGLRATDVENGWTIGTNIEQFYSDKNVNVILPVGGQSSFYSDWQQPNNGKHYKWET EEEECCCEECCCCCCEEECCCHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEE FLTNELVPVLKNGFRTNDDRAVVGLSMGGTAAINLAERRPDLFKFVGSFSGYLDTTSIGM EHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEHHHCCHHHHHHHHHCCCCCCCCCCC PAAIRAAQKDAGGYDSTAMWGPDGSQDWIDHDPKLGVEALRGITTYVSAGSGRDDFGEPG CHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCC SVANKKGSYAGIGLEVISRMTTETFVAHARRAGVEVQAFFRPSGVHDWPYWQFEMTQAWP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCC YMANALGLSESDRGASCAPIGAIADAVKSGKVGSCVNNEYDVPGGKVEDFVSGRAYWSPS HHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCC TGAHALYGRINARYSEMGGPQSWLGFPISSEFAIKDNARVVQFQNGNIYWSPQRGAIAVP CCCEEEEEECCCHHHHCCCCCHHCCCCCCCCEEECCCCEEEEEECCCEEECCCCCCEECC KDIVDKWGEQQWENGFLGFPVAEAKEVAGGFIQEFEGGLVVRTKDNKNQWLRGEIAKKYR HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH EMKTAESELGFPVSDEIKINGGAFQQFEHGNIYWSAATGAHFIRKGDIFNTWGVKKWEQG HHHHHHHHCCCCCCCCEEECCCCEEEEECCCEEEEECCCCEEEECCCEEECCCCCCCCCC ELGFPVTDHTQIPAGGEEITFQHGKISQVNGVIREERR CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12948626 [H]