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The map label for this gene is clpS

Identifier: 38234427

GI number: 38234427

Start: 1899940

End: 1900281

Strand: Reverse

Name: clpS

Synonym: DIP1857

Alternate gene names: 38234427

Gene position: 1900281-1899940 (Counterclockwise)

Preceding gene: 38234432

Following gene: 38234426

Centisome position: 76.36

GC content: 52.92

Gene sequence:

>342_bases
ATGTATGGCGCGACGAATGACGTGAATGCCCTTGGCGTGGTGCTTTCTTCATCCATGGCCACCCCCTCTCTTGATGAGGA
GATGGCCGTCGAAGTGGCATCCAGTGAGAATCTGCCGTGGATGTGCATCGTGTGGGACGACCCAGTCAACCTGATGAGCT
ATGTCACCTATGTGTTCCAAACAATTCTCGGATACAGCAAGAAGAGAGCCACAGAGCTGATGATGCAAGTGCATACCGAA
GGCAAAGCTGTGGTTTCTTCTGGTGAGCGAGACAAAGTAGAAGCCGACGTGAAAAAGCTGCACACAGCAGGTCTTTGGGC
CACAATGCAGCAAGGCGGCTAG

Upstream 100 bases:

>100_bases
CATGTCGGTGAGAAGCGCAGTTGATTGATTATGAGTCACGACTCACAGCTTAGCCCCCGAAACAACGTGACGGTGGCAAT
ACCTACTAGGCTGGTGAACT

Downstream 100 bases:

>100_bases
GAAAGGAAAAACCGGCGTGGAAGCCTGGAAAAAGAAAAAAGGCCTGTTCAAGGGGGCTCGGTATCAATGTACGCTCGAGC
CAATTGAGCGGGAAGTGCTG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MYGATNDVNALGVVLSSSMATPSLDEEMAVEVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKKRATELMMQVHTE
GKAVVSSGERDKVEADVKKLHTAGLWATMQQGG

Sequences:

>Translated_113_residues
MYGATNDVNALGVVLSSSMATPSLDEEMAVEVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKKRATELMMQVHTE
GKAVVSSGERDKVEADVKKLHTAGLWATMQQGG
>Mature_113_residues
MYGATNDVNALGVVLSSSMATPSLDEEMAVEVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKKRATELMMQVHTE
GKAVVSSGERDKVEADVKKLHTAGLWATMQQGG

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_CORDI (Q6NFN0)

Other databases:

- EMBL:   BX248359
- RefSeq:   NP_940194.1
- ProteinModelPortal:   Q6NFN0
- SMR:   Q6NFN0
- GeneID:   2649232
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1857
- NMPDR:   fig|257309.1.peg.1785
- HOGENOM:   HBG545468
- OMA:   GLWATLQ
- ProtClustDB:   PRK00033
- BioCyc:   CDIP257309:DIP1857-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12348; Mature: 12348

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGATNDVNALGVVLSSSMATPSLDEEMAVEVASSENLPWMCIVWDDPVNLMSYVTYVFQ
CCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
TILGYSKKRATELMMQVHTEGKAVVSSGERDKVEADVKKLHTAGLWATMQQGG
HHHCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYGATNDVNALGVVLSSSMATPSLDEEMAVEVASSENLPWMCIVWDDPVNLMSYVTYVFQ
CCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
TILGYSKKRATELMMQVHTEGKAVVSSGERDKVEADVKKLHTAGLWATMQQGG
HHHCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910