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The map label for this gene is rnz [C]

Identifier: 38234422

GI number: 38234422

Start: 1896272

End: 1897090

Strand: Reverse

Name: rnz [C]

Synonym: DIP1852

Alternate gene names: 38234422

Gene position: 1897090-1896272 (Counterclockwise)

Preceding gene: 38234423

Following gene: 38234421

Centisome position: 76.23

GC content: 56.9

Gene sequence:

>819_bases
GTGCGTTCCTTGTGTTCACTTTTTACATCAAAACGTGGCAATGTTAGCAGCATGAAGCTGACCATTCTCGGAAGTTCTGG
AAGCGTAGGTGCGCCAGACAATCCTTCCTCCGGCTACCTCATTCAGTTCGAGAATTCCCCGAGCATTGCGATGGACTTTG
GCCACGGTGTGATGGGTGAACTCCAACGGATTCAAGATCCTAACGACGCCCACGTGGTGTTCTCCCACATGCACGCCGAT
CACTGCATGGATTTCCCTGCACTGATGGTGTGGCGGCGATTCCACCCCACCCAACCCGCGCCGGGTCGAAACCTCTGCGG
TGGCCCGAAGGATGCACCAGTGGTGTTGGGTCGTCTGAGCAGTAATTCCATTGACAAAGTGGATGACATGTCGGATACGT
TCGCGTTCATCCCATGGGAGCCTGGCAAAGAAGAGATCTTTGGTGCAGTGACCATCACCCCATGGCCGACGATCCACCCG
ATTGATTCCTATGCGCTGCGCCTAAAAGAAACCCGCACGGGGAAAGTCATCGCATATTCCGGTGACGCCGCCTATGCGGA
AAATCTGATTGATTGTGCACGTGACGCCGACCTGTTCTTGTGCGAGGCCACATGGGGTGCCACCAGCGAAGGTAAGGCCC
CAGACATGCACATGAGTGGCGCAGAAGCTGGCCGTCTCGCGCGGTTGGCGGGTGCGAAGAAACTCGTGCTGGTGCACATC
CCACCATGGAGTGATACCAATGAGGCGCTTGCTGCGGCGCGGGCAGAATTTGACGGCGAGGTTCTCGTCGGCGAGCACGG
TCTGGAGCTGACAGTGTAG

Upstream 100 bases:

>100_bases
ACATTTGAATCGACAGGGGATCCGGTGCTGTTCGCACAGTTGGCGGAGCGGTTCTTGGGGCCTCATGTGACGAACGTGGA
AAAATTCGCGGGTATGTAAT

Downstream 100 bases:

>100_bases
CGTAAACCGCATGACTGATTTTTCTCGTGCAGACGGCCGCGCCGTCGACCAGATGCGTACTGTTAAAATCACCCGCGGTT
TTACCTCAAACCCAGCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRSLCSLFTSKRGNVSSMKLTILGSSGSVGAPDNPSSGYLIQFENSPSIAMDFGHGVMGELQRIQDPNDAHVVFSHMHAD
HCMDFPALMVWRRFHPTQPAPGRNLCGGPKDAPVVLGRLSSNSIDKVDDMSDTFAFIPWEPGKEEIFGAVTITPWPTIHP
IDSYALRLKETRTGKVIAYSGDAAYAENLIDCARDADLFLCEATWGATSEGKAPDMHMSGAEAGRLARLAGAKKLVLVHI
PPWSDTNEALAAARAEFDGEVLVGEHGLELTV

Sequences:

>Translated_272_residues
MRSLCSLFTSKRGNVSSMKLTILGSSGSVGAPDNPSSGYLIQFENSPSIAMDFGHGVMGELQRIQDPNDAHVVFSHMHAD
HCMDFPALMVWRRFHPTQPAPGRNLCGGPKDAPVVLGRLSSNSIDKVDDMSDTFAFIPWEPGKEEIFGAVTITPWPTIHP
IDSYALRLKETRTGKVIAYSGDAAYAENLIDCARDADLFLCEATWGATSEGKAPDMHMSGAEAGRLARLAGAKKLVLVHI
PPWSDTNEALAAARAEFDGEVLVGEHGLELTV
>Mature_272_residues
MRSLCSLFTSKRGNVSSMKLTILGSSGSVGAPDNPSSGYLIQFENSPSIAMDFGHGVMGELQRIQDPNDAHVVFSHMHAD
HCMDFPALMVWRRFHPTQPAPGRNLCGGPKDAPVVLGRLSSNSIDKVDDMSDTFAFIPWEPGKEEIFGAVTITPWPTIHP
IDSYALRLKETRTGKVIAYSGDAAYAENLIDCARDADLFLCEATWGATSEGKAPDMHMSGAEAGRLARLAGAKKLVLVHI
PPWSDTNEALAAARAEFDGEVLVGEHGLELTV

Specific function: Zinc Phosphodiesterase, Which Displays Some Trna 3'- Processing Endonuclease Activity. Probably Involved In Trna Maturation, By Removing A 3'Trailer From Precursor Trna. [C]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the atsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: 3.1.26.11 [C]

Molecular weight: Translated: 29350; Mature: 29350

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLCSLFTSKRGNVSSMKLTILGSSGSVGAPDNPSSGYLIQFENSPSIAMDFGHGVMGE
CCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHH
LQRIQDPNDAHVVFSHMHADHCMDFPALMVWRRFHPTQPAPGRNLCGGPKDAPVVLGRLS
HHHCCCCCCCEEEEEECCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC
SNSIDKVDDMSDTFAFIPWEPGKEEIFGAVTITPWPTIHPIDSYALRLKETRTGKVIAYS
CCCCCCCCCCCCCEEEECCCCCHHHEEEEEEECCCCCCCCCCHHEEEEEECCCCEEEEEE
GDAAYAENLIDCARDADLFLCEATWGATSEGKAPDMHMSGAEAGRLARLAGAKKLVLVHI
CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEE
PPWSDTNEALAAARAEFDGEVLVGEHGLELTV
CCCCCCHHHHHHHHHCCCCEEEEECCCCEEEC
>Mature Secondary Structure
MRSLCSLFTSKRGNVSSMKLTILGSSGSVGAPDNPSSGYLIQFENSPSIAMDFGHGVMGE
CCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHH
LQRIQDPNDAHVVFSHMHADHCMDFPALMVWRRFHPTQPAPGRNLCGGPKDAPVVLGRLS
HHHCCCCCCCEEEEEECCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC
SNSIDKVDDMSDTFAFIPWEPGKEEIFGAVTITPWPTIHPIDSYALRLKETRTGKVIAYS
CCCCCCCCCCCCCEEEECCCCCHHHEEEEEEECCCCCCCCCCHHEEEEEECCCCEEEEEE
GDAAYAENLIDCARDADLFLCEATWGATSEGKAPDMHMSGAEAGRLARLAGAKKLVLVHI
CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEE
PPWSDTNEALAAARAEFDGEVLVGEHGLELTV
CCCCCCHHHHHHHHHCCCCEEEEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]