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The map label for this gene is 38234407

Identifier: 38234407

GI number: 38234407

Start: 1879255

End: 1880043

Strand: Direct

Name: 38234407

Synonym: DIP1836

Alternate gene names: NA

Gene position: 1879255-1880043 (Clockwise)

Preceding gene: 38234406

Following gene: 38234410

Centisome position: 75.51

GC content: 57.79

Gene sequence:

>789_bases
ATGAGACATTATGGAGATAGGAAAATTCCCTATGTTGAAGATTCCGACAAAGTGAAGCAATACCCAGAAGTATCACGAGA
ACTTGCGGAGAAGATAAACAGCCTGGCATTAACACCTGGACCCACTGGCCCGCCGGGTCCTGCTGGCCCTAAAGGCGCGA
CAGGTGAGACAGGTCCGCAAGGCCCGCCGGGTCCTGCTGGCCCTGCCGGTGCAACAGGCCCAATGGGTCCACCCGGCCCA
CCCGGCGGCGGTTCCGGCGGTTCCACTGTGTCGGTGCCAGGTCCGCAAGGCCCGCCGGGTCCTGCTGGCCCTAAAGGCGC
GACAGGTGAGACAGGTCCGCAAGGCCCGCCGGGTCCTGCTGGCCCTAAAGGCGCGACAGGTGAGACAGGTCCGCAAGGCC
CGCCGGGTCCTGCTGGCCCTAAAGGCGCGAAGGGTGAGACAGGTCCGCAAGGCCCGCCGGGTCCTGCTGGCCCTAAAGGC
GCGAAGGGTGATTCGGGTGTTCCGTTGTCGTATGAGTTCACGCAGAAAGTGGAATCCTCGAATGGTACGGCGGTGTTCGG
TTTATTATCGAATGGGTTTGTTGAGGTGCGCATTACCGGTTCTTATAGCTCGGATGTGTTTAATATTCCTTATAATTACC
GGCCTTTGAAAGCTGGTACCCAAATGGCGTTGTTTTCCACCAGTGGTGTGGGTGTTGCGAAAGTTGGTGAGGATAAGATC
ACAATTCAGGGTTATTCCCGGAATGCCCAGTGTTCTGGGACCGTATTGTATCCCCATAGGGAGTTCTAA

Upstream 100 bases:

>100_bases
CATTTATTCCGAAAGAACAGTCAAACAAAACCTGAGCCGCCCTTGGATGGCTTTTGGCGAACAATGGCAACACACTGCCG
GAGAATGGAAGGATTCATAA

Downstream 100 bases:

>100_bases
GCCGCAATCGTCCACGCAGCACGCGCAGCTGACCGCATAGAGGTATCACTCACGGCCGTGTAAATCTGAGTAGTGGCAAC
GCTCGCATGGCCCAACAATT

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRHYGDRKIPYVEDSDKVKQYPEVSRELAEKINSLALTPGPTGPPGPAGPKGATGETGPQGPPGPAGPAGATGPMGPPGP
PGGGSGGSTVSVPGPQGPPGPAGPKGATGETGPQGPPGPAGPKGATGETGPQGPPGPAGPKGAKGETGPQGPPGPAGPKG
AKGDSGVPLSYEFTQKVESSNGTAVFGLLSNGFVEVRITGSYSSDVFNIPYNYRPLKAGTQMALFSTSGVGVAKVGEDKI
TIQGYSRNAQCSGTVLYPHREF

Sequences:

>Translated_262_residues
MRHYGDRKIPYVEDSDKVKQYPEVSRELAEKINSLALTPGPTGPPGPAGPKGATGETGPQGPPGPAGPAGATGPMGPPGP
PGGGSGGSTVSVPGPQGPPGPAGPKGATGETGPQGPPGPAGPKGATGETGPQGPPGPAGPKGAKGETGPQGPPGPAGPKG
AKGDSGVPLSYEFTQKVESSNGTAVFGLLSNGFVEVRITGSYSSDVFNIPYNYRPLKAGTQMALFSTSGVGVAKVGEDKI
TIQGYSRNAQCSGTVLYPHREF
>Mature_262_residues
MRHYGDRKIPYVEDSDKVKQYPEVSRELAEKINSLALTPGPTGPPGPAGPKGATGETGPQGPPGPAGPAGATGPMGPPGP
PGGGSGGSTVSVPGPQGPPGPAGPKGATGETGPQGPPGPAGPKGATGETGPQGPPGPAGPKGAKGETGPQGPPGPAGPKG
AKGDSGVPLSYEFTQKVESSNGTAVFGLLSNGFVEVRITGSYSSDVFNIPYNYRPLKAGTQMALFSTSGVGVAKVGEDKI
TIQGYSRNAQCSGTVLYPHREF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI56847616, Length=213, Percent_Identity=36.6197183098592, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI65301115, Length=213, Percent_Identity=37.0892018779343, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI5803080, Length=234, Percent_Identity=36.3247863247863, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI183583553, Length=131, Percent_Identity=41.2213740458015, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI115527062, Length=157, Percent_Identity=38.8535031847134, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI98985806, Length=117, Percent_Identity=47.008547008547, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI98985810, Length=117, Percent_Identity=47.008547008547, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI299523257, Length=117, Percent_Identity=47.008547008547, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI115527070, Length=157, Percent_Identity=38.8535031847134, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI299523253, Length=117, Percent_Identity=47.008547008547, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI115527066, Length=157, Percent_Identity=38.8535031847134, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI115392133, Length=135, Percent_Identity=48.1481481481481, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI48762934, Length=137, Percent_Identity=49.6350364963504, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI119829187, Length=171, Percent_Identity=40.3508771929825, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569903, Length=130, Percent_Identity=47.6923076923077, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17535735, Length=118, Percent_Identity=47.4576271186441, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25799; Mature: 25799

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHYGDRKIPYVEDSDKVKQYPEVSRELAEKINSLALTPGPTGPPGPAGPKGATGETGPQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC
GPPGPAGPAGATGPMGPPGPPGGGSGGSTVSVPGPQGPPGPAGPKGATGETGPQGPPGPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPKGATGETGPQGPPGPAGPKGAKGETGPQGPPGPAGPKGAKGDSGVPLSYEFTQKVESS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
NGTAVFGLLSNGFVEVRITGSYSSDVFNIPYNYRPLKAGTQMALFSTSGVGVAKVGEDKI
CCCEEEEEECCCEEEEEEECCCCCCEEECCCCCEECCCCCEEEEEECCCCCEEEECCCEE
TIQGYSRNAQCSGTVLYPHREF
EEEECCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MRHYGDRKIPYVEDSDKVKQYPEVSRELAEKINSLALTPGPTGPPGPAGPKGATGETGPQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC
GPPGPAGPAGATGPMGPPGPPGGGSGGSTVSVPGPQGPPGPAGPKGATGETGPQGPPGPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPKGATGETGPQGPPGPAGPKGAKGETGPQGPPGPAGPKGAKGDSGVPLSYEFTQKVESS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
NGTAVFGLLSNGFVEVRITGSYSSDVFNIPYNYRPLKAGTQMALFSTSGVGVAKVGEDKI
CCCEEEEEECCCEEEEEEECCCCCCEEECCCCCEECCCCCEEEEEECCCCCEEEECCCEE
TIQGYSRNAQCSGTVLYPHREF
EEEECCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA