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The map label for this gene is ylmE [H]

Identifier: 38234316

GI number: 38234316

Start: 1789874

End: 1790539

Strand: Direct

Name: ylmE [H]

Synonym: DIP1745

Alternate gene names: 38234316

Gene position: 1789874-1790539 (Clockwise)

Preceding gene: 38234314

Following gene: 38234317

Centisome position: 71.92

GC content: 53.75

Gene sequence:

>666_bases
ATGTGTATCGTAGGATTCATGTCCGATTTTCGCACCCGCTACCAGATCGTTTCTGAAAAAATCGCCGCAGCAGCTCAGCG
TTCTGGGCGTAAGCCCAGCGATATTCGCCTCATCGCAGTGAGTAAAAACCATCCGGTTGCGGCAGTTCAGGAAGCCATGG
ACGCGGGAGTGACGGTGTTTGGCGAAAATAGGCCCCAAGAGCTGGTAGAAAAAGCGCAGGCGATCCCCAACGCCTATTGG
TGTGCTATTGGTCGGCTACAGCGTAATAAGGCAAAAGATATTGTTCGCTACGCGCAGGAGTTTCATGCATTGGATTCGCT
GCGGCTAGCGCAGGCACTGGATCAGCGGCTTGACCACCAGCTCGATGTGTTTGTGCAGGTAAATACCTCTCATGAGGAGC
AAAAAGGTGGCATTGCGCCAAGCGAAGTCGAGCCATTTTTAGCTGAGCTGTCGCAGTTTTCACATCTACACGTGCGTGGG
CTGATGACGATGGCGCGCAACGATCCTTGCGAGCGCGTTGTCAGAGCGTCGTTTAGCGAGCTAAGAGAGCTTCGCGACGC
CCTCCTCCCCCACGGTGAACTATCCATGGGCATGTCGGGCGATTTCGAGTGGGCCATCGAAGAAGGTGCCACTTCTGTTC
GAGTAGGAAGCGCATTATTTTTATGA

Upstream 100 bases:

>100_bases
AGTCTTCTCCCCCATCGGGGACAAGTTCTCTGGCAAAGATATGCCCAAGGGTGTGCTCGTGAATTGTCAGGCCCAGATAG
CGCGAAGTCCGTGTGTTCAT

Downstream 100 bases:

>100_bases
TTCTTGCCATTGACCTTGGAACTTCCGGAGCAAAAGCTGCCATCATCGATTCGGCTGGAGCTGTGCATGAACAAACATTC
GTGCCCTACTCCACCACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MCIVGFMSDFRTRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVFGENRPQELVEKAQAIPNAYW
CAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRLDHQLDVFVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRG
LMTMARNDPCERVVRASFSELRELRDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALFL

Sequences:

>Translated_221_residues
MCIVGFMSDFRTRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVFGENRPQELVEKAQAIPNAYW
CAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRLDHQLDVFVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRG
LMTMARNDPCERVVRASFSELRELRDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALFL
>Mature_221_residues
MCIVGFMSDFRTRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVFGENRPQELVEKAQAIPNAYW
CAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRLDHQLDVFVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRG
LMTMARNDPCERVVRASFSELRELRDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALFL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=222, Percent_Identity=35.5855855855856, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=38.8646288209607, Blast_Score=129, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17533025, Length=211, Percent_Identity=35.5450236966825, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=230, Percent_Identity=35.6521739130435, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI45550861, Length=212, Percent_Identity=36.3207547169811, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24633; Mature: 24633

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCIVGFMSDFRTRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVF
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCEEEE
GENRPQELVEKAQAIPNAYWCAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRLDHQ
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LDVFVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRGLMTMARNDPCERVVRASFSE
EEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LRELRDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALFL
HHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEECCCCCCC
>Mature Secondary Structure
MCIVGFMSDFRTRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVF
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCEEEE
GENRPQELVEKAQAIPNAYWCAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRLDHQ
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LDVFVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRGLMTMARNDPCERVVRASFSE
EEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LRELRDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALFL
HHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]