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The map label for this gene is ybgI [C]

Identifier: 38234251

GI number: 38234251

Start: 1717298

End: 1718434

Strand: Reverse

Name: ybgI [C]

Synonym: DIP1680

Alternate gene names: 38234251

Gene position: 1718434-1717298 (Counterclockwise)

Preceding gene: 38234252

Following gene: 38234250

Centisome position: 69.05

GC content: 53.03

Gene sequence:

>1137_bases
ATGATCACCGTTTCAGATGTAAGAAAAGTAATGGATCGTGCGTATCCACCACACCTCGCGGAATCTTGGGATGCAGTAGG
CCTTATCTGTGGTGATCCTGCTGCGCCAGTATCCAAGGTGATGCTTGCCCTTGACTGCACTCAAGAAGTTGCTGATAAGG
CAGTTGATATCGGTGCCGATATGCTGATCGTGCACCACCCATTATTACTGCGGGGAGTGAGCTCGGTTGCTGCCGATACC
CCTAAAGGCAAGGTTATTCACACACTAATTACTGGTGGGGTGGCATTGTTTGCAGCCCATACCAATGCGGATTCGGCACG
ACCAGGTGTTAATGACAAATTAGCTGAGTTAGTGGGAATTACCCCAGGCAGGCCGGTGAAGCCCATCCTTAAAGGCCTTG
ATAAATGGGGAATTTATGTGCCGGAATCTGCTGCGCAGAGCGTAAAAGACGCTGTTTTTGAAGCAGGTGCGGGTGCTATC
GGGGATTATTCCCAGTGCAGTTTTGAATGGCAAGGTACTGGACAATTCCTTCCGCATCACAACGCGCAGCCTGTAGTAGG
ACATCCAGGACAACTTGAGCGCACCGAAGAACTACGGGTTGAGTTCGTGGCACCGGCGCGTCTTCGCACCACGCTTATCG
ACGCTATCCGAGCAGCGCACCCCTATGAGGAACCGGCATTTGATGTGGTGAGCATGCAATCAACTCAAGATCTTGAGACG
GCTGAAGGACTTGGGCGCGTTGGCACTTTGCCGGAGCCAATGCGTTTTGGTGACTTTGTGCAGCAGGTAGCTGATGCGCT
CCCAGAGACATCGTGGGGGATTAGGGCAGCCGGTGATCCTGAGCAGATGGTGCACACCGTTGCAGTTTCCTCTGGTTCCG
GTGATTCCTTCCTAGACGCGGTTGCAGCCCTAGGTGTTGACGTCTATGTCACGTCCGATCTACGGCACCATCCTGCTGAT
GAGTCGCGACGTGCTCAAGGTCCGTTGCTGATTGATACCGCGCACTGGGCGAGCGAGTTCCCGTGGACTTATCAAGTTCA
AGAACTGTTGGCACAAGAGTTTGCGCAGCTCGATGTCGAAGTTGCTACTTTGCGCACGGATCCTTGGAATATCTCTGCAC
ATCCGCAACTTCGTTAA

Upstream 100 bases:

>100_bases
GACTTGAGTTTTCCTATTGGCGCCTTGCGGTGCGTCCTCGTGACCAAGTACAACGGCTACTAACCGCCATCGACAACATT
ATTGGAGCAAAGAAGTAACG

Downstream 100 bases:

>100_bases
ACCACGTGGGTGGGACTAGTATGCAACAGGAAAACTCAACAATGAGGCCCGCACGAATACGTGAAAATGAGGAATTCTGA
TGAAGCTGGATCGCCACCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MITVSDVRKVMDRAYPPHLAESWDAVGLICGDPAAPVSKVMLALDCTQEVADKAVDIGADMLIVHHPLLLRGVSSVAADT
PKGKVIHTLITGGVALFAAHTNADSARPGVNDKLAELVGITPGRPVKPILKGLDKWGIYVPESAAQSVKDAVFEAGAGAI
GDYSQCSFEWQGTGQFLPHHNAQPVVGHPGQLERTEELRVEFVAPARLRTTLIDAIRAAHPYEEPAFDVVSMQSTQDLET
AEGLGRVGTLPEPMRFGDFVQQVADALPETSWGIRAAGDPEQMVHTVAVSSGSGDSFLDAVAALGVDVYVTSDLRHHPAD
ESRRAQGPLLIDTAHWASEFPWTYQVQELLAQEFAQLDVEVATLRTDPWNISAHPQLR

Sequences:

>Translated_378_residues
MITVSDVRKVMDRAYPPHLAESWDAVGLICGDPAAPVSKVMLALDCTQEVADKAVDIGADMLIVHHPLLLRGVSSVAADT
PKGKVIHTLITGGVALFAAHTNADSARPGVNDKLAELVGITPGRPVKPILKGLDKWGIYVPESAAQSVKDAVFEAGAGAI
GDYSQCSFEWQGTGQFLPHHNAQPVVGHPGQLERTEELRVEFVAPARLRTTLIDAIRAAHPYEEPAFDVVSMQSTQDLET
AEGLGRVGTLPEPMRFGDFVQQVADALPETSWGIRAAGDPEQMVHTVAVSSGSGDSFLDAVAALGVDVYVTSDLRHHPAD
ESRRAQGPLLIDTAHWASEFPWTYQVQELLAQEFAQLDVEVATLRTDPWNISAHPQLR
>Mature_378_residues
MITVSDVRKVMDRAYPPHLAESWDAVGLICGDPAAPVSKVMLALDCTQEVADKAVDIGADMLIVHHPLLLRGVSSVAADT
PKGKVIHTLITGGVALFAAHTNADSARPGVNDKLAELVGITPGRPVKPILKGLDKWGIYVPESAAQSVKDAVFEAGAGAI
GDYSQCSFEWQGTGQFLPHHNAQPVVGHPGQLERTEELRVEFVAPARLRTTLIDAIRAAHPYEEPAFDVVSMQSTQDLET
AEGLGRVGTLPEPMRFGDFVQQVADALPETSWGIRAAGDPEQMVHTVAVSSGSGDSFLDAVAALGVDVYVTSDLRHHPAD
ESRRAQGPLLIDTAHWASEFPWTYQVQELLAQEFAQLDVEVATLRTDPWNISAHPQLR

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Homo sapiens, GI209862879, Length=359, Percent_Identity=23.1197771587744, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI215272360, Length=359, Percent_Identity=23.1197771587744, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI56605983, Length=359, Percent_Identity=23.1197771587744, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI215272362, Length=112, Percent_Identity=33.0357142857143, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19921430, Length=126, Percent_Identity=30.952380952381, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 40657; Mature: 40657

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVSDVRKVMDRAYPPHLAESWDAVGLICGDPAAPVSKVMLALDCTQEVADKAVDIGAD
CCCHHHHHHHHHHCCCCCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
MLIVHHPLLLRGVSSVAADTPKGKVIHTLITGGVALFAAHTNADSARPGVNDKLAELVGI
CHHHHCHHHHHHHHHHHCCCCCCCEEHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHCC
TPGRPVKPILKGLDKWGIYVPESAAQSVKDAVFEAGAGAIGDYSQCSFEWQGTGQFLPHH
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHCEEEECCCCCCCCCC
NAQPVVGHPGQLERTEELRVEFVAPARLRTTLIDAIRAAHPYEEPAFDVVSMQSTQDLET
CCCCCCCCCCCCCCHHHHEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHH
AEGLGRVGTLPEPMRFGDFVQQVADALPETSWGIRAAGDPEQMVHTVAVSSGSGDSFLDA
HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEECCCCHHHHHH
VAALGVDVYVTSDLRHHPADESRRAQGPLLIDTAHWASEFPWTYQVQELLAQEFAQLDVE
HHHCCCEEEEECCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHCCEE
VATLRTDPWNISAHPQLR
EEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MITVSDVRKVMDRAYPPHLAESWDAVGLICGDPAAPVSKVMLALDCTQEVADKAVDIGAD
CCCHHHHHHHHHHCCCCCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
MLIVHHPLLLRGVSSVAADTPKGKVIHTLITGGVALFAAHTNADSARPGVNDKLAELVGI
CHHHHCHHHHHHHHHHHCCCCCCCEEHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHCC
TPGRPVKPILKGLDKWGIYVPESAAQSVKDAVFEAGAGAIGDYSQCSFEWQGTGQFLPHH
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHCEEEECCCCCCCCCC
NAQPVVGHPGQLERTEELRVEFVAPARLRTTLIDAIRAAHPYEEPAFDVVSMQSTQDLET
CCCCCCCCCCCCCCHHHHEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCHHH
AEGLGRVGTLPEPMRFGDFVQQVADALPETSWGIRAAGDPEQMVHTVAVSSGSGDSFLDA
HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEECCCCHHHHHH
VAALGVDVYVTSDLRHHPADESRRAQGPLLIDTAHWASEFPWTYQVQELLAQEFAQLDVE
HHHCCCEEEEECCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHCCEE
VATLRTDPWNISAHPQLR
EEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]