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The map label for this gene is yocS [H]

Identifier: 38233809

GI number: 38233809

Start: 1222345

End: 1223313

Strand: Direct

Name: yocS [H]

Synonym: DIP1221

Alternate gene names: 38233809

Gene position: 1222345-1223313 (Clockwise)

Preceding gene: 38233808

Following gene: 38233813

Centisome position: 49.12

GC content: 47.68

Gene sequence:

>969_bases
ATGGTTGATAGCCATGAAAAACAGCGCGGGGACACTGGGGAAGTAACTACCGAAGATAGGTCTTCAGCAATTGCCGTCCT
CGTGTTTCCGGTTTTGATGATTGTGGGCGCAATTATTGCGTATCAAACGCCTGAAACTTTTGTCGGCTTCAAGCCATATC
TAAATCCAATGCTAATGTTCATTATGTTTGCGATGGGATTGACGATAACACTTCCTGATTTGAAAGAGCTTGCTCGGCGA
CCATGGTCAATAGCGCTGGGTGTGGTGTGTCAATTTATTGTCATGCCTTTGTCTGCGGTGGCAATATCGTCAATTTTGGG
CTTTGATCAGTCACTTACCATCGGGCTAATTCTATTGGGATCCGTGCCTGGGGGTACCGCCTCCAACGTATTAGCGTATT
TGGCAAAAGGAGACGTTGCATTGTCTGTCGCAATGACATCAGTTTCTACATTGGTTTCACCTTTTGCCACACCACTGATC
ATGCTGCTGTTAGCTGGAGAAAGCGCTGAGGTCAATGCTTCTGGAATGATGGTGATCCTGTTAAAAACGGTATTGATTCC
AGTTGGTTTTGGGCTCATTTTAAGGTTTTTCGCTCAGCGTTTTGTCGATACTGTACTGCCGGTATTGCCGTGGCTTTCGA
TTGTAGTGATTGGGATCGTGATGATGACCGTTGTAGCTGGGGCGCACGCTAAATTAGCGCTAGTTGGCATCGTGGTTGTG
TTAGGTGTTGCGATTCAAAATCTTATTGGTTTTATTGCTGGATACTGGAGCGCTCGCGCAGTACGTCAACCAGAAGCTTC
TTGTCGTACTGCGTCGATTGAGGTTGCCACACAAAACTCTGGGCTGGCAGCTTCGATGGCAACGCAGTTTTTTACACCGG
AAGCGGCGTTGCCCGGTGCAGTTGCGACAATCTATGCAAATATCTCTGGCGCGATTTATGCGGCGATAGTTCGACGTAAG
GCGCTGTAG

Upstream 100 bases:

>100_bases
TTATATTGGGAATTAAATTCCACTATGTGAGAATGAGGGGGATCGTGTGTGGTGTAGAACAAAGCGGGAGTATGGCCCAC
GGGAGGTGCCTAGGGTGTCA

Downstream 100 bases:

>100_bases
GAAAAGGAAGCAAGAACAAATCGGTTGTGATGCGGAAGTACATTACAGCCTCTTTCGCGAGGGGAAGTCCTAAATGACAT
AATGTACATTATCGGACATT

Product: putative sodium-dependent transport membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MVDSHEKQRGDTGEVTTEDRSSAIAVLVFPVLMIVGAIIAYQTPETFVGFKPYLNPMLMFIMFAMGLTITLPDLKELARR
PWSIALGVVCQFIVMPLSAVAISSILGFDQSLTIGLILLGSVPGGTASNVLAYLAKGDVALSVAMTSVSTLVSPFATPLI
MLLLAGESAEVNASGMMVILLKTVLIPVGFGLILRFFAQRFVDTVLPVLPWLSIVVIGIVMMTVVAGAHAKLALVGIVVV
LGVAIQNLIGFIAGYWSARAVRQPEASCRTASIEVATQNSGLAASMATQFFTPEAALPGAVATIYANISGAIYAAIVRRK
AL

Sequences:

>Translated_322_residues
MVDSHEKQRGDTGEVTTEDRSSAIAVLVFPVLMIVGAIIAYQTPETFVGFKPYLNPMLMFIMFAMGLTITLPDLKELARR
PWSIALGVVCQFIVMPLSAVAISSILGFDQSLTIGLILLGSVPGGTASNVLAYLAKGDVALSVAMTSVSTLVSPFATPLI
MLLLAGESAEVNASGMMVILLKTVLIPVGFGLILRFFAQRFVDTVLPVLPWLSIVVIGIVMMTVVAGAHAKLALVGIVVV
LGVAIQNLIGFIAGYWSARAVRQPEASCRTASIEVATQNSGLAASMATQFFTPEAALPGAVATIYANISGAIYAAIVRRK
AL
>Mature_322_residues
MVDSHEKQRGDTGEVTTEDRSSAIAVLVFPVLMIVGAIIAYQTPETFVGFKPYLNPMLMFIMFAMGLTITLPDLKELARR
PWSIALGVVCQFIVMPLSAVAISSILGFDQSLTIGLILLGSVPGGTASNVLAYLAKGDVALSVAMTSVSTLVSPFATPLI
MLLLAGESAEVNASGMMVILLKTVLIPVGFGLILRFFAQRFVDTVLPVLPWLSIVVIGIVMMTVVAGAHAKLALVGIVVV
LGVAIQNLIGFIAGYWSARAVRQPEASCRTASIEVATQNSGLAASMATQFFTPEAALPGAVATIYANISGAIYAAIVRRK
AL

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=258, Percent_Identity=31.0077519379845, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI37537552, Length=243, Percent_Identity=28.3950617283951, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI215422368, Length=235, Percent_Identity=31.9148936170213, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI215422370, Length=235, Percent_Identity=31.9148936170213, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI9790143, Length=235, Percent_Identity=31.9148936170213, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4506971, Length=251, Percent_Identity=27.8884462151394, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI24308414, Length=275, Percent_Identity=26.9090909090909, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI58219066, Length=233, Percent_Identity=26.1802575107296, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33857; Mature: 33857

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDSHEKQRGDTGEVTTEDRSSAIAVLVFPVLMIVGAIIAYQTPETFVGFKPYLNPMLMF
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHH
IMFAMGLTITLPDLKELARRPWSIALGVVCQFIVMPLSAVAISSILGFDQSLTIGLILLG
HHHHHCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEE
SVPGGTASNVLAYLAKGDVALSVAMTSVSTLVSPFATPLIMLLLAGESAEVNASGMMVIL
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LKTVLIPVGFGLILRFFAQRFVDTVLPVLPWLSIVVIGIVMMTVVAGAHAKLALVGIVVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGVAIQNLIGFIAGYWSARAVRQPEASCRTASIEVATQNSGLAASMATQFFTPEAALPGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCH
VATIYANISGAIYAAIVRRKAL
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVDSHEKQRGDTGEVTTEDRSSAIAVLVFPVLMIVGAIIAYQTPETFVGFKPYLNPMLMF
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHH
IMFAMGLTITLPDLKELARRPWSIALGVVCQFIVMPLSAVAISSILGFDQSLTIGLILLG
HHHHHCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEE
SVPGGTASNVLAYLAKGDVALSVAMTSVSTLVSPFATPLIMLLLAGESAEVNASGMMVIL
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LKTVLIPVGFGLILRFFAQRFVDTVLPVLPWLSIVVIGIVMMTVVAGAHAKLALVGIVVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGVAIQNLIGFIAGYWSARAVRQPEASCRTASIEVATQNSGLAASMATQFFTPEAALPGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCH
VATIYANISGAIYAAIVRRKAL
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]