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The map label for this gene is yqxC [H]

Identifier: 38233770

GI number: 38233770

Start: 1177969

End: 1178790

Strand: Direct

Name: yqxC [H]

Synonym: DIP1180

Alternate gene names: 38233770

Gene position: 1177969-1178790 (Clockwise)

Preceding gene: 38233769

Following gene: 38233771

Centisome position: 47.33

GC content: 48.54

Gene sequence:

>822_bases
ATGCAATCTAGAAAGCGCCTCGATGCCGAGCTTGTTCGTCGTAAAATCGCACGCTCTCGCGAGCAAGCAGTAGAGATGAT
TAAAGATGGCCGGGTCCACGTACAGGGTTTCGTTGCCAAGAAGCCAGCCACCCAAGTGACCCCAGAGGCGTCAATTCGTG
TAGAAGATGCTGGTTTGGATGATTGGGCATCTCGTGGCGCTCATAAATTATTGGGTGCACTCGCAGAGTTTAAATCTAAA
GGCTTGAATGTTTCTGGACGTCGTGCGCTTGATGCTGGTGCTTCAACTGGTGGTTTCACAGATGTTCTACTGCGGGAATC
TGCTTCCGAGGTCGTAGCAGTCGATGTTGGGTATGGTCAGCTCATTTGGCGGTTACAAAATGATGCTCGTGTTAAGGTTT
TGGACCGAACCAATATTCGAAATCTGAGCTTGGAAATAACAGATGGCCCCTGCGATTTAATGGTGGGTGATCTTTCGTTT
ATCTCTCTGAAGCTCACTTTGCCAGCTATCGCAGCCTGCATGAGTGATGGTGCGGACCTTTTACCCATGGTTAAACCCCA
GTTTGAGGTAGGTAAAGAACGACTAGGACACGGCGGAGTGGTCCGTGACCCAAAGCTTCGGGCAGAGGTCACCGAAGATA
TCGCATTATTTGCTCAGCAACTTGGACTTAGTTTTGTCGATGTAGTCGCATCACCATTACCTGGTCCATCAGGAAATGTT
GAATATTTCCTCTGGCTAAAAAAGGATTCAGGTAGGTCTGCTAAGGGGTTACATGAGATTCATGAAAAAGTCGCGGAAGC
AGTCCAGAAAGGTCCGCAGTAA

Upstream 100 bases:

>100_bases
ACGATGAAGCCCAACTATTAACGCGGGCTCATTCACTATTACATGATGCGCTTTCCTAAAATAGGATGGCACACATCGTT
ATCGGAAAGAGCTACAACAG

Downstream 100 bases:

>100_bases
TGACTATCGATTGCCATGAAGATCGCAGAGTTTTACTAGTTCCGCATACCGGAAGACCGCAAAATGTTGCTTCAGCTGCG
CTAGCTGCCGAGCTTCTCGA

Product: putative cytotoxin/hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MQSRKRLDAELVRRKIARSREQAVEMIKDGRVHVQGFVAKKPATQVTPEASIRVEDAGLDDWASRGAHKLLGALAEFKSK
GLNVSGRRALDAGASTGGFTDVLLRESASEVVAVDVGYGQLIWRLQNDARVKVLDRTNIRNLSLEITDGPCDLMVGDLSF
ISLKLTLPAIAACMSDGADLLPMVKPQFEVGKERLGHGGVVRDPKLRAEVTEDIALFAQQLGLSFVDVVASPLPGPSGNV
EYFLWLKKDSGRSAKGLHEIHEKVAEAVQKGPQ

Sequences:

>Translated_273_residues
MQSRKRLDAELVRRKIARSREQAVEMIKDGRVHVQGFVAKKPATQVTPEASIRVEDAGLDDWASRGAHKLLGALAEFKSK
GLNVSGRRALDAGASTGGFTDVLLRESASEVVAVDVGYGQLIWRLQNDARVKVLDRTNIRNLSLEITDGPCDLMVGDLSF
ISLKLTLPAIAACMSDGADLLPMVKPQFEVGKERLGHGGVVRDPKLRAEVTEDIALFAQQLGLSFVDVVASPLPGPSGNV
EYFLWLKKDSGRSAKGLHEIHEKVAEAVQKGPQ
>Mature_273_residues
MQSRKRLDAELVRRKIARSREQAVEMIKDGRVHVQGFVAKKPATQVTPEASIRVEDAGLDDWASRGAHKLLGALAEFKSK
GLNVSGRRALDAGASTGGFTDVLLRESASEVVAVDVGYGQLIWRLQNDARVKVLDRTNIRNLSLEITDGPCDLMVGDLSF
ISLKLTLPAIAACMSDGADLLPMVKPQFEVGKERLGHGGVVRDPKLRAEVTEDIALFAQQLGLSFVDVVASPLPGPSGNV
EYFLWLKKDSGRSAKGLHEIHEKVAEAVQKGPQ

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29598; Mature: 29598

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRKRLDAELVRRKIARSREQAVEMIKDGRVHVQGFVAKKPATQVTPEASIRVEDAGLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEECCCCC
DWASRGAHKLLGALAEFKSKGLNVSGRRALDAGASTGGFTDVLLRESASEVVAVDVGYGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCEEEEECCHHE
LIWRLQNDARVKVLDRTNIRNLSLEITDGPCDLMVGDLSFISLKLTLPAIAACMSDGADL
EEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEECCCEEEEEEHHHHHHHHHHHCCCCC
LPMVKPQFEVGKERLGHGGVVRDPKLRAEVTEDIALFAQQLGLSFVDVVASPLPGPSGNV
CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCE
EYFLWLKKDSGRSAKGLHEIHEKVAEAVQKGPQ
EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQSRKRLDAELVRRKIARSREQAVEMIKDGRVHVQGFVAKKPATQVTPEASIRVEDAGLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEECCCCC
DWASRGAHKLLGALAEFKSKGLNVSGRRALDAGASTGGFTDVLLRESASEVVAVDVGYGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCEEEEECCHHE
LIWRLQNDARVKVLDRTNIRNLSLEITDGPCDLMVGDLSFISLKLTLPAIAACMSDGADL
EEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEECCCEEEEEEHHHHHHHHHHHCCCCC
LPMVKPQFEVGKERLGHGGVVRDPKLRAEVTEDIALFAQQLGLSFVDVVASPLPGPSGNV
CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCE
EYFLWLKKDSGRSAKGLHEIHEKVAEAVQKGPQ
EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]