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The map label for this gene is nagD [H]

Identifier: 38233768

GI number: 38233768

Start: 1176792

End: 1177748

Strand: Direct

Name: nagD [H]

Synonym: DIP1178

Alternate gene names: 38233768

Gene position: 1176792-1177748 (Clockwise)

Preceding gene: 38233767

Following gene: 38233769

Centisome position: 47.29

GC content: 48.59

Gene sequence:

>957_bases
TTGTTGTTTGACCTAGACGGTACTGTCTGGGAAGGCGGCAGGGCGTTACCTTTTGCCGTTGACTCAATTAATCAAGTAAA
TCTTCCGCTCATGTATGTGACCAACAATGCCTCGCGTGGTCCAGAAGTAGTTGCCTCTTTGTTGTCGGATATGGGCATTT
TTACTCAACCTGAACAGGTTCTTACCTCAGCCCAAGCAGCGATCGATCTAGCTCTCAAAGAGGTACCTGTTGGTAGCAAC
GTCTTGGTGTTAGGCACAGATTCATTTAAATCTCTGGCTGCAGAAGCAGGTTATATGGTAGTGAACTCTGCTGATATGGA
GCCTGTTGCCGTCTTCCATGGTCATAATCCCGCCACTAGTTGGACTGAATTGAGCGAGGCTGCTCTGGCTATTAGATGTG
GTGCTAAATATTACGCGTCAAATTTAGATACAACTCTTCCGAGTGAGCGAGGGCTTTGCGTTGGTAACGGGTCGATGGTG
GCGGCGGTTGTGAGCGCAACAGGAGTTCAACCAGTTTCGGCAGGCAAACCGGAAGCTGCTATGTTCCATGTTGCCGCTGA
AAAACTGGCTTCAGAGCGTCCGTTAGCTGTCGGTGATCGTTTAAATACCGATATTGCTGGTGGCGTTGCTGCGGGTTTTG
ATACCCTGCATCTTCTTACTGGCGTATCCCAGCATTGGGCGCTCGTTCATGCTATTGAATCGGAACGCCCGACTCTTATA
GCTGAGGATTTACGTGCTCTTAGCTCTGATAGAAGTGTGTTAATGCCTCAACTGCAGGGGGATTTTAACGCTTATCTCCA
AGGAACCGAAATTGTTCTTAACGGTGGTTCGACGGCTTCGACTTCTACGGAAGCGTTGAGATCAGTGTTGTCTGTAGCGT
GGCAAAGTGCTGAATTTGGTGGCACTGTTAAACCGGTCAGTGAACATGCTATTCGGTGTATGTCTGAATGGCGTTAA

Upstream 100 bases:

>100_bases
CGCTTGGAGTCTCTTGCTCATTAATTTGTGCTTGATTGAGCTCTGATCTCTTTCGTCCACTATGCTGATACGCATGACTG
TTTTGGATGAGTATGATGCC

Downstream 100 bases:

>100_bases
TAGGTGATTTGAGTTAAATGGAGATTCCTAAGCCTTATGATCCTCAAAATGATTCTCTTAGCCCTTCTCAAATTGCGTCA
GATATAAGCGAATTATTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLFDLDGTVWEGGRALPFAVDSINQVNLPLMYVTNNASRGPEVVASLLSDMGIFTQPEQVLTSAQAAIDLALKEVPVGSN
VLVLGTDSFKSLAAEAGYMVVNSADMEPVAVFHGHNPATSWTELSEAALAIRCGAKYYASNLDTTLPSERGLCVGNGSMV
AAVVSATGVQPVSAGKPEAAMFHVAAEKLASERPLAVGDRLNTDIAGGVAAGFDTLHLLTGVSQHWALVHAIESERPTLI
AEDLRALSSDRSVLMPQLQGDFNAYLQGTEIVLNGGSTASTSTEALRSVLSVAWQSAEFGGTVKPVSEHAIRCMSEWR

Sequences:

>Translated_318_residues
MLFDLDGTVWEGGRALPFAVDSINQVNLPLMYVTNNASRGPEVVASLLSDMGIFTQPEQVLTSAQAAIDLALKEVPVGSN
VLVLGTDSFKSLAAEAGYMVVNSADMEPVAVFHGHNPATSWTELSEAALAIRCGAKYYASNLDTTLPSERGLCVGNGSMV
AAVVSATGVQPVSAGKPEAAMFHVAAEKLASERPLAVGDRLNTDIAGGVAAGFDTLHLLTGVSQHWALVHAIESERPTLI
AEDLRALSSDRSVLMPQLQGDFNAYLQGTEIVLNGGSTASTSTEALRSVLSVAWQSAEFGGTVKPVSEHAIRCMSEWR
>Mature_318_residues
MLFDLDGTVWEGGRALPFAVDSINQVNLPLMYVTNNASRGPEVVASLLSDMGIFTQPEQVLTSAQAAIDLALKEVPVGSN
VLVLGTDSFKSLAAEAGYMVVNSADMEPVAVFHGHNPATSWTELSEAALAIRCGAKYYASNLDTTLPSERGLCVGNGSMV
AAVVSATGVQPVSAGKPEAAMFHVAAEKLASERPLAVGDRLNTDIAGGVAAGFDTLHLLTGVSQHWALVHAIESERPTLI
AEDLRALSSDRSVLMPQLQGDFNAYLQGTEIVLNGGSTASTSTEALRSVLSVAWQSAEFGGTVKPVSEHAIRCMSEWR

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. NagD family [H]

Homologues:

Organism=Homo sapiens, GI10092677, Length=244, Percent_Identity=31.5573770491803, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1786890, Length=228, Percent_Identity=28.5087719298246, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560956, Length=286, Percent_Identity=24.8251748251748, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562458, Length=273, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17558880, Length=273, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193210059, Length=253, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6319965, Length=235, Percent_Identity=26.3829787234043, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24666141, Length=264, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24656330, Length=266, Percent_Identity=25.5639097744361, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR006354
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 33427; Mature: 33427

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDLDGTVWEGGRALPFAVDSINQVNLPLMYVTNNASRGPEVVASLLSDMGIFTQPEQV
CEECCCCCEECCCEECEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHH
LTSAQAAIDLALKEVPVGSNVLVLGTDSFKSLAAEAGYMVVNSADMEPVAVFHGHNPATS
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCC
WTELSEAALAIRCGAKYYASNLDTTLPSERGLCVGNGSMVAAVVSATGVQPVSAGKPEAA
HHHHHHHHEEEECCCHHHHCCCCCCCCCCCCEEEECCCEEEEEHHHCCCCCCCCCCCCHH
MFHVAAEKLASERPLAVGDRLNTDIAGGVAAGFDTLHLLTGVSQHWALVHAIESERPTLI
HHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHH
AEDLRALSSDRSVLMPQLQGDFNAYLQGTEIVLNGGSTASTSTEALRSVLSVAWQSAEFG
HHHHHHHHCCCCEECHHHCCCHHHEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
GTVKPVSEHAIRCMSEWR
CCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLFDLDGTVWEGGRALPFAVDSINQVNLPLMYVTNNASRGPEVVASLLSDMGIFTQPEQV
CEECCCCCEECCCEECEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHH
LTSAQAAIDLALKEVPVGSNVLVLGTDSFKSLAAEAGYMVVNSADMEPVAVFHGHNPATS
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCC
WTELSEAALAIRCGAKYYASNLDTTLPSERGLCVGNGSMVAAVVSATGVQPVSAGKPEAA
HHHHHHHHEEEECCCHHHHCCCCCCCCCCCCEEEECCCEEEEEHHHCCCCCCCCCCCCHH
MFHVAAEKLASERPLAVGDRLNTDIAGGVAAGFDTLHLLTGVSQHWALVHAIESERPTLI
HHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHH
AEDLRALSSDRSVLMPQLQGDFNAYLQGTEIVLNGGSTASTSTEALRSVLSVAWQSAEFG
HHHHHHHHCCCCEECHHHCCCHHHEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
GTVKPVSEHAIRCMSEWR
CCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA