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The map label for this gene is atpD [H]

Identifier: 38233646

GI number: 38233646

Start: 1033457

End: 1034902

Strand: Direct

Name: atpD [H]

Synonym: DIP1052

Alternate gene names: 38233646

Gene position: 1033457-1034902 (Clockwise)

Preceding gene: 38233645

Following gene: 38233647

Centisome position: 41.53

GC content: 58.02

Gene sequence:

>1446_bases
ATGACCACAGCTCTTGAAGAGCAGAACACGCAGCAGGCGTCCGTCGCCGGCCGCGTCGTGCGCGTCATCGGTCCGGTCGT
CGACGTGGAGTTCCCGCGTGGCGAGCTGCCGGCACTGTACAACGCGCTGACTGTCGAGGTCACCCTCGAGGCAGTCGCTA
AGACCATTACCCTTGAGGTTGCCCAGCACTTGGGCGACAACCTCGTTCGCGCCGTGTCCATGGCTCCTACCGACGGCCTT
GTCCGTGGTGCTGTTGTGACCGACTCGGGCAAGCCAATCTCCGTGCCAGTTGGCGACGTTGTTAAAGGCCACGTTTTCAA
CGCACTGGGCGATTGCTTGGATGAGCCAGGTCTCGGCCGCGATGGCGAGCAGTGGGGAATTCACCGCGATCCACCACCAT
TCGATCAGCTCGAAGGTAAGACCGAAATCCTCGAGACCGGTATTAAGGTCATCGACTTGCTCACCCCTTACGTTAAGGGC
GGCAAGATTGGTCTGTTCGGTGGTGCAGGTGTGGGTAAGACCGTGCTCATCCAGGAGATGATCACTCGTATTGCTCGCGA
GTTCTCCGGTACCTCCGTATTCGCTGGCGTTGGTGAGCGTACCCGTGAGGGCACCGACCTCTTCCTCGAAATGGAAGAAA
TGGGTGTTCTTCAGGACACCGCTCTCGTGTTCGGCCAGATGGACGAGCCACCAGGAGTCCGTATGCGCGTTGCTCTGTCC
GGTCTGACCATGGCGGAGTACTTCCGCGATGTTCAGCACCAGGACGTGCTTCTGTTCATCGATAACATTTTCCGTTTCAC
CCAGGCCGGTTCCGAGGTTTCGACCCTTCTTGGTCGTATGCCTTCCGCCGTGGGTTACCAGCCAACCTTGGCTGACGAGA
TGGGTGTTCTCCAGGAGCGTATTACCTCTATTAAGGGTAAGTCGATTACGTCTCTGCAGGCCGTTTACGTTCCTGCCGAC
GACTACACCGACCCAGCTCCTGCGACTACGTTCGCTCACTTAGATGCAACCACCGAGCTCGACCGTGCAATCGCCTCCAA
GGGTATTTACCCAGCAGTGAACCCGCTGACCTCTACCTCTCGTATCCTCGAGCCAGGTATCGTAGGCGAGCGTCACTACG
CAGTTGCACAGCGCGTGATCAACATTCTGCAGAAGAACAAGGAACTCCAGGACATCATCGCCATCCTCGGTATGGACGAG
CTGTCTGAAGAGGATAAGATCACCGTTCAGCGCGCACGTCGCCTTGAGCGCTTCTTGGGCCAGAACTTCTTCGTTGCTGA
AAAGTTCACCGGCATCCCAGGCTCCTACGTGCCGCTGGCTCACACCATCGACGCATTCGAGCGCATCTGCAACGGCGACT
TCGACCACTACCCAGAGCAGGCCTTCAACGGCTTGGGTGGCTTGGACGACGTCGAGGCTGCATACAAGAAGATGACCGAG
AAGTAG

Upstream 100 bases:

>100_bases
TGTTGCCAACCAGGCCCGTCAGGCACAGATCACCCAGGAAATCACAGAGATCGTCGGTGGTGCTAGCGCACTCGGCGATA
GCGGAGAAAGTGACTAGATT

Downstream 100 bases:

>100_bases
AGGAGGCACGCACATGGCTGACATCACCGTGGAACTGGTTTCAGTAGAGCGTATGCTGTGGTCTGGAAAGGCCAGCATCG
TTACTGCACAGACCGTTGAA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MTTALEEQNTQQASVAGRVVRVIGPVVDVEFPRGELPALYNALTVEVTLEAVAKTITLEVAQHLGDNLVRAVSMAPTDGL
VRGAVVTDSGKPISVPVGDVVKGHVFNALGDCLDEPGLGRDGEQWGIHRDPPPFDQLEGKTEILETGIKVIDLLTPYVKG
GKIGLFGGAGVGKTVLIQEMITRIAREFSGTSVFAGVGERTREGTDLFLEMEEMGVLQDTALVFGQMDEPPGVRMRVALS
GLTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSIKGKSITSLQAVYVPAD
DYTDPAPATTFAHLDATTELDRAIASKGIYPAVNPLTSTSRILEPGIVGERHYAVAQRVINILQKNKELQDIIAILGMDE
LSEEDKITVQRARRLERFLGQNFFVAEKFTGIPGSYVPLAHTIDAFERICNGDFDHYPEQAFNGLGGLDDVEAAYKKMTE
K

Sequences:

>Translated_481_residues
MTTALEEQNTQQASVAGRVVRVIGPVVDVEFPRGELPALYNALTVEVTLEAVAKTITLEVAQHLGDNLVRAVSMAPTDGL
VRGAVVTDSGKPISVPVGDVVKGHVFNALGDCLDEPGLGRDGEQWGIHRDPPPFDQLEGKTEILETGIKVIDLLTPYVKG
GKIGLFGGAGVGKTVLIQEMITRIAREFSGTSVFAGVGERTREGTDLFLEMEEMGVLQDTALVFGQMDEPPGVRMRVALS
GLTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSIKGKSITSLQAVYVPAD
DYTDPAPATTFAHLDATTELDRAIASKGIYPAVNPLTSTSRILEPGIVGERHYAVAQRVINILQKNKELQDIIAILGMDE
LSEEDKITVQRARRLERFLGQNFFVAEKFTGIPGSYVPLAHTIDAFERICNGDFDHYPEQAFNGLGGLDDVEAAYKKMTE
K
>Mature_480_residues
TTALEEQNTQQASVAGRVVRVIGPVVDVEFPRGELPALYNALTVEVTLEAVAKTITLEVAQHLGDNLVRAVSMAPTDGLV
RGAVVTDSGKPISVPVGDVVKGHVFNALGDCLDEPGLGRDGEQWGIHRDPPPFDQLEGKTEILETGIKVIDLLTPYVKGG
KIGLFGGAGVGKTVLIQEMITRIAREFSGTSVFAGVGERTREGTDLFLEMEEMGVLQDTALVFGQMDEPPGVRMRVALSG
LTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSIKGKSITSLQAVYVPADD
YTDPAPATTFAHLDATTELDRAIASKGIYPAVNPLTSTSRILEPGIVGERHYAVAQRVINILQKNKELQDIIAILGMDEL
SEEDKITVQRARRLERFLGQNFFVAEKFTGIPGSYVPLAHTIDAFERICNGDFDHYPEQAFNGLGGLDDVEAAYKKMTEK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=479, Percent_Identity=60.7515657620042, Blast_Score=554, Evalue=1e-158,
Organism=Homo sapiens, GI19913424, Length=324, Percent_Identity=28.0864197530864, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI19913428, Length=351, Percent_Identity=23.6467236467236, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI19913426, Length=369, Percent_Identity=23.5772357723577, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI50345984, Length=299, Percent_Identity=25.4180602006689, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI4757810, Length=299, Percent_Identity=25.4180602006689, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=60.6060606060606, Blast_Score=548, Evalue=1e-157,
Organism=Escherichia coli, GI1788251, Length=344, Percent_Identity=30.5232558139535, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1790172, Length=319, Percent_Identity=27.2727272727273, Blast_Score=99, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=476, Percent_Identity=60.2941176470588, Blast_Score=543, Evalue=1e-155,
Organism=Caenorhabditis elegans, GI17565854, Length=326, Percent_Identity=29.4478527607362, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17570191, Length=448, Percent_Identity=23.4375, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=352, Percent_Identity=23.8636363636364, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=299, Percent_Identity=25.0836120401338, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71988063, Length=299, Percent_Identity=25.0836120401338, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=466, Percent_Identity=61.3733905579399, Blast_Score=562, Evalue=1e-161,
Organism=Saccharomyces cerevisiae, GI6319603, Length=427, Percent_Identity=25.5269320843091, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=277, Percent_Identity=25.9927797833935, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319370, Length=367, Percent_Identity=25.6130790190736, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24638766, Length=461, Percent_Identity=62.2559652928417, Blast_Score=545, Evalue=1e-155,
Organism=Drosophila melanogaster, GI28574560, Length=463, Percent_Identity=60.9071274298056, Blast_Score=527, Evalue=1e-150,
Organism=Drosophila melanogaster, GI20129479, Length=346, Percent_Identity=28.9017341040462, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24583988, Length=353, Percent_Identity=28.0453257790368, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24583986, Length=353, Percent_Identity=28.0453257790368, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24583984, Length=353, Percent_Identity=28.0453257790368, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=28.3950617283951, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281361666, Length=359, Percent_Identity=25.0696378830084, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24646341, Length=359, Percent_Identity=25.0696378830084, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI17136796, Length=359, Percent_Identity=25.0696378830084, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24658560, Length=298, Percent_Identity=25.1677852348993, Blast_Score=86, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=47.8723404255319, Blast_Score=79, Evalue=9e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52262; Mature: 52131

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTALEEQNTQQASVAGRVVRVIGPVVDVEFPRGELPALYNALTVEVTLEAVAKTITLEV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEHHHHHHHHHHHH
AQHLGDNLVRAVSMAPTDGLVRGAVVTDSGKPISVPVGDVVKGHVFNALGDCLDEPGLGR
HHHHHHHHHHHHHCCCCCCCEECEEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCC
DGEQWGIHRDPPPFDQLEGKTEILETGIKVIDLLTPYVKGGKIGLFGGAGVGKTVLIQEM
CCHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
ITRIAREFSGTSVFAGVGERTREGTDLFLEMEEMGVLQDTALVFGQMDEPPGVRMRVALS
HHHHHHHCCCCEEEECCCCCCCCCCCEEEEHHHCCCHHHHHHHHCCCCCCCCCEEEEEEH
GLTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQER
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
ITSIKGKSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRAIASKGIYPAVNPLTSTS
HHHCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCHHH
RILEPGIVGERHYAVAQRVINILQKNKELQDIIAILGMDELSEEDKITVQRARRLERFLG
HHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHC
QNFFVAEKFTGIPGSYVPLAHTIDAFERICNGDFDHYPEQAFNGLGGLDDVEAAYKKMTE
CCEEEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHCC
K
C
>Mature Secondary Structure 
TTALEEQNTQQASVAGRVVRVIGPVVDVEFPRGELPALYNALTVEVTLEAVAKTITLEV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEHHHHHHHHHHHH
AQHLGDNLVRAVSMAPTDGLVRGAVVTDSGKPISVPVGDVVKGHVFNALGDCLDEPGLGR
HHHHHHHHHHHHHCCCCCCCEECEEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCC
DGEQWGIHRDPPPFDQLEGKTEILETGIKVIDLLTPYVKGGKIGLFGGAGVGKTVLIQEM
CCHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
ITRIAREFSGTSVFAGVGERTREGTDLFLEMEEMGVLQDTALVFGQMDEPPGVRMRVALS
HHHHHHHCCCCEEEECCCCCCCCCCCEEEEHHHCCCHHHHHHHHCCCCCCCCCEEEEEEH
GLTMAEYFRDVQHQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQER
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
ITSIKGKSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRAIASKGIYPAVNPLTSTS
HHHCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCHHH
RILEPGIVGERHYAVAQRVINILQKNKELQDIIAILGMDELSEEDKITVQRARRLERFLG
HHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHC
QNFFVAEKFTGIPGSYVPLAHTIDAFERICNGDFDHYPEQAFNGLGGLDDVEAAYKKMTE
CCEEEEHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA