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The map label for this gene is ykoE [H]

Identifier: 38233547

GI number: 38233547

Start: 922958

End: 923551

Strand: Direct

Name: ykoE [H]

Synonym: DIP0951

Alternate gene names: 38233547

Gene position: 922958-923551 (Clockwise)

Preceding gene: 38233546

Following gene: 38233549

Centisome position: 37.09

GC content: 54.04

Gene sequence:

>594_bases
ATGAACCGATCGAAGAATTCTTGGCGTGTCATTGACATCGTGATCGCCTCCGTCATTGCTATTGCCACTGGCTTGCTGTT
TTGGGTGTGGAACACCATCGGATACGCCTGGTATTCGGCGGCCGACGCTTTCACACCTGGGTTTGGCGGCATCGCTGTTG
GAATCTGGCTGATCGGCGGTGTGTTGGGTGGACTTATCATTCGTAAACCCTTTGCGGCGATCTACGTAGAACTCATCGCC
GCTTGTGTTTCCGCAGGCATTGGTAATCAGTGGGGAATTGAAACGATTTACTCAGGTCTAGCACAAGGCCTCGGCGCTGA
GCTCGTGTTCGCCTTTTTCCTTTATCGACGCTTCGGGCTAGTCGTAGCAGCGCTTTCTGGTGTTGGCGCAGCCGTCGGTG
CCTTCGTCCTCGAACTGTTCACCTCCGGAAATCTTGCTAAATCCGCTGTCTTTAACCTGACCTACCTAGGAAGCATGGCT
ATTTCCGGTGCTGTTCTAGCTGGTGTCCTTGGCTACCTTCTAGTCAAAGCGCTGGCACAAACTGGCGCGCTCGATCGCTT
TGCTGCTGGTAGGCAAGCCCGAGCACTTGTCTAG

Upstream 100 bases:

>100_bases
GACGGCATACGTTTGCCACAAAGCTGAGACAGGGCGAGAAGACGTGCACGTCCCTGAACCGTTGAACCTGATCCGGGTAA
TACCGGCGATAGGAAGAATA

Downstream 100 bases:

>100_bases
TCTAGGAATCCTAGCTATCTGATTTTTCTCGTACACCAAAAACCTGCGGCCGCTGTGACTACCACAGTGGCCGCAAGCCA
TATATCGGGGTGGGTGAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MNRSKNSWRVIDIVIASVIAIATGLLFWVWNTIGYAWYSAADAFTPGFGGIAVGIWLIGGVLGGLIIRKPFAAIYVELIA
ACVSAGIGNQWGIETIYSGLAQGLGAELVFAFFLYRRFGLVVAALSGVGAAVGAFVLELFTSGNLAKSAVFNLTYLGSMA
ISGAVLAGVLGYLLVKALAQTGALDRFAAGRQARALV

Sequences:

>Translated_197_residues
MNRSKNSWRVIDIVIASVIAIATGLLFWVWNTIGYAWYSAADAFTPGFGGIAVGIWLIGGVLGGLIIRKPFAAIYVELIA
ACVSAGIGNQWGIETIYSGLAQGLGAELVFAFFLYRRFGLVVAALSGVGAAVGAFVLELFTSGNLAKSAVFNLTYLGSMA
ISGAVLAGVLGYLLVKALAQTGALDRFAAGRQARALV
>Mature_197_residues
MNRSKNSWRVIDIVIASVIAIATGLLFWVWNTIGYAWYSAADAFTPGFGGIAVGIWLIGGVLGGLIIRKPFAAIYVELIA
ACVSAGIGNQWGIETIYSGLAQGLGAELVFAFFLYRRFGLVVAALSGVGAAVGAFVLELFTSGNLAKSAVFNLTYLGSMA
ISGAVLAGVLGYLLVKALAQTGALDRFAAGRQARALV

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 20499; Mature: 20499

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSKNSWRVIDIVIASVIAIATGLLFWVWNTIGYAWYSAADAFTPGFGGIAVGIWLIGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLGGLIIRKPFAAIYVELIAACVSAGIGNQWGIETIYSGLAQGLGAELVFAFFLYRRFGL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VVAALSGVGAAVGAFVLELFTSGNLAKSAVFNLTYLGSMAISGAVLAGVLGYLLVKALAQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGALDRFAAGRQARALV
HCCHHHHHCCCHHHCCC
>Mature Secondary Structure
MNRSKNSWRVIDIVIASVIAIATGLLFWVWNTIGYAWYSAADAFTPGFGGIAVGIWLIGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLGGLIIRKPFAAIYVELIAACVSAGIGNQWGIETIYSGLAQGLGAELVFAFFLYRRFGL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VVAALSGVGAAVGAFVLELFTSGNLAKSAVFNLTYLGSMAISGAVLAGVLGYLLVKALAQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGALDRFAAGRQARALV
HCCHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]