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The map label for this gene is ydhM [C]

Identifier: 38233506

GI number: 38233506

Start: 882775

End: 883422

Strand: Direct

Name: ydhM [C]

Synonym: DIP0910

Alternate gene names: 38233506

Gene position: 882775-883422 (Clockwise)

Preceding gene: 38233505

Following gene: 38233507

Centisome position: 35.47

GC content: 53.09

Gene sequence:

>648_bases
ATGGTTCGACAGCGGATGAGTGGCATTCAGCGCCGTGAGCAATTGATCGCGATTGGTCGCGAGGTGTTTGCTGAGCGTGG
TTTTGATGGTGCAAGCATGGAGGAAATCGCAGCTCGCGCTGGGGTATCCAAGCCTGTGGTGTACGAGCACTTTGGCGGCA
AAGAGGGTTTATATGCCGTGATTGTGGATCGTGAGATGGTGAAACTCCAATCGGTCATCACCGGTTCCATGCAGACGGGG
CGTTCACGTGCTCGCATTGAGCAAGCGGTGGTCGCGTTGTTGACGTATGTTGAGGAAGAAACGGATGCGTTTCAGATCTT
GGTGCGGGACATGAAAGCAGGTCAAGATCATAGCTATTCCACCTTGCTTAACGACGCAGTCGAGCAGGTTTCTCATATCC
TCGGTCAAGCATTTGAGCGTTCTGGATTAAATCCGAAGAATGCGACGTTGTATGCCCAAGCGCTGGTGGGCATGGTTTCT
ATGACTGCGCAGTGGTGGTTGGATCGTCGTAAAGAACCCAATGCGGCGACGAAAGAGCAGGTCGCTGCTCACATCGTAAA
TCTGTGCTGGAACGGGCTTGCCGGAATGGAAGCAAACCCGCAGTTGTCTAACATTGATAGTCCTCCAGAGACGTTGGGCG
CCCACTAA

Upstream 100 bases:

>100_bases
AGCATTTCTATCCCATCGAATCGTGTAGATTCGGTGGGATTTTTGCATGGCGCATAGGTCTGCAGTGTCCGTGCTCCTCT
AGGAGGTAGGCTGAATAATT

Downstream 100 bases:

>100_bases
TACTCGCTAGACTCACTGAATCGTTTCCTCACGAAGGGAGGGCATGTTCGTGCCTGATAAATCCGTGCCTGCGGCACAAC
CACCAATGCTTGCTGGTTTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulatory Protein; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcriptional Regulator TetR-Family; Transcriptional Regulator TetR Family Protein; TetR-Family Protein Regulatory Protein; Transcription Regulator; TetR-Family Regulatory Protein; TetR-Family Transcriptional Regulator Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MVRQRMSGIQRREQLIAIGREVFAERGFDGASMEEIAARAGVSKPVVYEHFGGKEGLYAVIVDREMVKLQSVITGSMQTG
RSRARIEQAVVALLTYVEEETDAFQILVRDMKAGQDHSYSTLLNDAVEQVSHILGQAFERSGLNPKNATLYAQALVGMVS
MTAQWWLDRRKEPNAATKEQVAAHIVNLCWNGLAGMEANPQLSNIDSPPETLGAH

Sequences:

>Translated_215_residues
MVRQRMSGIQRREQLIAIGREVFAERGFDGASMEEIAARAGVSKPVVYEHFGGKEGLYAVIVDREMVKLQSVITGSMQTG
RSRARIEQAVVALLTYVEEETDAFQILVRDMKAGQDHSYSTLLNDAVEQVSHILGQAFERSGLNPKNATLYAQALVGMVS
MTAQWWLDRRKEPNAATKEQVAAHIVNLCWNGLAGMEANPQLSNIDSPPETLGAH
>Mature_215_residues
MVRQRMSGIQRREQLIAIGREVFAERGFDGASMEEIAARAGVSKPVVYEHFGGKEGLYAVIVDREMVKLQSVITGSMQTG
RSRARIEQAVVALLTYVEEETDAFQILVRDMKAGQDHSYSTLLNDAVEQVSHILGQAFERSGLNPKNATLYAQALVGMVS
MTAQWWLDRRKEPNAATKEQVAAHIVNLCWNGLAGMEANPQLSNIDSPPETLGAH

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23713; Mature: 23713

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRQRMSGIQRREQLIAIGREVFAERGFDGASMEEIAARAGVSKPVVYEHFGGKEGLYAV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCEEEE
IVDREMVKLQSVITGSMQTGRSRARIEQAVVALLTYVEEETDAFQILVRDMKAGQDHSYS
EEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TLLNDAVEQVSHILGQAFERSGLNPKNATLYAQALVGMVSMTAQWWLDRRKEPNAATKEQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VAAHIVNLCWNGLAGMEANPQLSNIDSPPETLGAH
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MVRQRMSGIQRREQLIAIGREVFAERGFDGASMEEIAARAGVSKPVVYEHFGGKEGLYAV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCEEEE
IVDREMVKLQSVITGSMQTGRSRARIEQAVVALLTYVEEETDAFQILVRDMKAGQDHSYS
EEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TLLNDAVEQVSHILGQAFERSGLNPKNATLYAQALVGMVSMTAQWWLDRRKEPNAATKEQ
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VAAHIVNLCWNGLAGMEANPQLSNIDSPPETLGAH
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA