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The map label for this gene is rplY

Identifier: 38233497

GI number: 38233497

Start: 870759

End: 871376

Strand: Reverse

Name: rplY

Synonym: DIP0901

Alternate gene names: 38233497

Gene position: 871376-870759 (Counterclockwise)

Preceding gene: 38233498

Following gene: 38233496

Centisome position: 35.01

GC content: 56.15

Gene sequence:

>618_bases
ATGGCTGATTACACCACCATTGCTGCACAACCCCGTAACGAATTCGGCAAGGGCTTCGCTCGTCGTCTCCGCGTTGCAGG
TCAGGTTCCTGGCGTCATCTACGGCGTAGACGTTGAGGCTCCAATCCACTTCTCCATCAACCGTCTCGAGCTGCACGCTG
TTCTCCGCGCGCACGGCGTTAACGCCATCATCGAGCTCGACATCGAGGGCGAGAAGCACCTCACCATGATCAAGCACGTT
GATCAGAACGTCTTGACCCTCAACGCTGACCACGTTGACCTCCTCGCCATCAAACGCGGCGAAAAAGTTGAGGTCGAGGT
TCCTGTAGTTCTCACCGGTGAGACCGCACCAGGCACCACCTTGGTTCAGGATGCTGACGTTGTCCTCGTTGAGGCAGACG
TTCTCTCCATCCCAGAAGAGATCACCTTCTCCGTCGAGGGCCTCGACGTAGATTCCAAGGTTCTCGCAGGCGACCTCGCA
ATGCCAGCCAACACCTCCTTGGTTGCAGACGCTGAAACCGTTATTGCTTCCGTCAACCATGAAGAAGTTGCTGAAGAAGC
AGAAGAGACTGAAGGCGAAGACGCCGAAGAAGCTCCAGCTGCAGAAGGCGAAGAGTAA

Upstream 100 bases:

>100_bases
TCGACGACGACATTTTCGAGTTGACCGCAGGCTTTATCATTCCTCGTGCACTTTAGGCGTGATACTGCGGTCGAAAATAA
CAACGACAAGGAGTTATCAC

Downstream 100 bases:

>100_bases
AAACTCTCGAAGCCGGCCTGTTTTGTACAGGCCGGCTTTTTGCTGCCACAATACCTTTGTGACTTCGCCATATCTAATCG
TCGGCCTTGGAAATCTAGGA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MADYTTIAAQPRNEFGKGFARRLRVAGQVPGVIYGVDVEAPIHFSINRLELHAVLRAHGVNAIIELDIEGEKHLTMIKHV
DQNVLTLNADHVDLLAIKRGEKVEVEVPVVLTGETAPGTTLVQDADVVLVEADVLSIPEEITFSVEGLDVDSKVLAGDLA
MPANTSLVADAETVIASVNHEEVAEEAEETEGEDAEEAPAAEGEE

Sequences:

>Translated_205_residues
MADYTTIAAQPRNEFGKGFARRLRVAGQVPGVIYGVDVEAPIHFSINRLELHAVLRAHGVNAIIELDIEGEKHLTMIKHV
DQNVLTLNADHVDLLAIKRGEKVEVEVPVVLTGETAPGTTLVQDADVVLVEADVLSIPEEITFSVEGLDVDSKVLAGDLA
MPANTSLVADAETVIASVNHEEVAEEAEETEGEDAEEAPAAEGEE
>Mature_204_residues
ADYTTIAAQPRNEFGKGFARRLRVAGQVPGVIYGVDVEAPIHFSINRLELHAVLRAHGVNAIIELDIEGEKHLTMIKHVD
QNVLTLNADHVDLLAIKRGEKVEVEVPVVLTGETAPGTTLVQDADVVLVEADVLSIPEEITFSVEGLDVDSKVLAGDLAM
PANTSLVADAETVIASVNHEEVAEEAEETEGEDAEEAPAAEGEE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CORDI (Q6NI77)

Other databases:

- EMBL:   BX248356
- RefSeq:   NP_939264.1
- ProteinModelPortal:   Q6NI77
- SMR:   Q6NI77
- GeneID:   2648585
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP0901
- NMPDR:   fig|257309.1.peg.855
- HOGENOM:   HBG731986
- OMA:   HIDQNVL
- ProtClustDB:   PRK05618
- BioCyc:   CDIP257309:DIP0901-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21918; Mature: 21787

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADYTTIAAQPRNEFGKGFARRLRVAGQVPGVIYGVDVEAPIHFSINRLELHAVLRAHGV
CCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHEEEHHHHCCC
NAIIELDIEGEKHLTMIKHVDQNVLTLNADHVDLLAIKRGEKVEVEVPVVLTGETAPGTT
CEEEEEEECCCCHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEEEEEEEEECCCCCCCE
LVQDADVVLVEADVLSIPEEITFSVEGLDVDSKVLAGDLAMPANTSLVADAETVIASVNH
EEECCCEEEEECHHHHCCHHHEEEEECCCCCCCEEECCCCCCCCCEEEECHHHHEEECCH
EEVAEEAEETEGEDAEEAPAAEGEE
HHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADYTTIAAQPRNEFGKGFARRLRVAGQVPGVIYGVDVEAPIHFSINRLELHAVLRAHGV
CCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHEEEHHHHCCC
NAIIELDIEGEKHLTMIKHVDQNVLTLNADHVDLLAIKRGEKVEVEVPVVLTGETAPGTT
CEEEEEEECCCCHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEEEEEEEEECCCCCCCE
LVQDADVVLVEADVLSIPEEITFSVEGLDVDSKVLAGDLAMPANTSLVADAETVIASVNH
EEECCCEEEEECHHHHCCHHHEEEEECCCCCCCEEECCCCCCCCCEEEECHHHHEEECCH
EEVAEEAEETEGEDAEEAPAAEGEE
HHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910