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The map label for this gene is rpoE [C]

Identifier: 38233477

GI number: 38233477

Start: 854590

End: 855129

Strand: Direct

Name: rpoE [C]

Synonym: DIP0880

Alternate gene names: 38233477

Gene position: 854590-855129 (Clockwise)

Preceding gene: 38233476

Following gene: 38233478

Centisome position: 34.34

GC content: 58.7

Gene sequence:

>540_bases
GTGGCACGACGCAACCCTCACGACCCGCGCGAGCACTTCCGCACCTGTTACGTAGCCAACTATCCCAAGATCTTGGCGTA
CGTTCGTCGACGCAGCGACACCGCAACCAGCGAAGACCTCACAGCGGAAGTGTTCGCCCGTGCGTGGCGACATTGGGAAA
CACACACCGGCGACGACCTGCCATGGCTCTACGGCATCGCCCGCAACGTACTCCTCGAGCACTACCGCGCCCGCGACCAT
CAGACCAGCATCATCAAGGCCAGTGCTCAACAAGCAACCGATCGCGCTCCCGACCTCACCGAAGCAGTCGACACCAGATT
AAGTATCCATGCGGCCTTGCAACGCCTAAATGAATCCGATCGAGAAATCCTCCTCCTACACGCATGGGAAGGCCTCGACC
CCGCAGAAATCGCCCAAGTTCTTGACATCAGCGCGAACAACGCGCGCGTCAAATTACATCGTGCTCGCACACATCTCGAT
CAGATTTTGTCCTCATCCACCACCGCTTCAGTGACCACACTTTCCCCACGGAGGGGGTAA

Upstream 100 bases:

>100_bases
CACCGTAACTGTTACCTGCGACTCCGGACTTACCGGTACCGCCACCTTCCCATCCGCGGGAAACGGCGGCCAGTAACCTT
CAACCAATAGAAAGTACCCA

Downstream 100 bases:

>100_bases
CAATCATCATGTCCTCTCACCATCACCACTCTTCCGATCGCACACTCGATGCCCTCCGCGCGATCAATCCCGTCGCCGAC
GACACCCTCTCCCGTGAGGA

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MARRNPHDPREHFRTCYVANYPKILAYVRRRSDTATSEDLTAEVFARAWRHWETHTGDDLPWLYGIARNVLLEHYRARDH
QTSIIKASAQQATDRAPDLTEAVDTRLSIHAALQRLNESDREILLLHAWEGLDPAEIAQVLDISANNARVKLHRARTHLD
QILSSSTTASVTTLSPRRG

Sequences:

>Translated_179_residues
MARRNPHDPREHFRTCYVANYPKILAYVRRRSDTATSEDLTAEVFARAWRHWETHTGDDLPWLYGIARNVLLEHYRARDH
QTSIIKASAQQATDRAPDLTEAVDTRLSIHAALQRLNESDREILLLHAWEGLDPAEIAQVLDISANNARVKLHRARTHLD
QILSSSTTASVTTLSPRRG
>Mature_178_residues
ARRNPHDPREHFRTCYVANYPKILAYVRRRSDTATSEDLTAEVFARAWRHWETHTGDDLPWLYGIARNVLLEHYRARDHQ
TSIIKASAQQATDRAPDLTEAVDTRLSIHAALQRLNESDREILLLHAWEGLDPAEIAQVLDISANNARVKLHRARTHLDQ
ILSSSTTASVTTLSPRRG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20450; Mature: 20319

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRNPHDPREHFRTCYVANYPKILAYVRRRSDTATSEDLTAEVFARAWRHWETHTGDDL
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
PWLYGIARNVLLEHYRARDHQTSIIKASAQQATDRAPDLTEAVDTRLSIHAALQRLNESD
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
REILLLHAWEGLDPAEIAQVLDISANNARVKLHRARTHLDQILSSSTTASVTTLSPRRG
CEEEEEEECCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCCCCC
>Mature Secondary Structure 
ARRNPHDPREHFRTCYVANYPKILAYVRRRSDTATSEDLTAEVFARAWRHWETHTGDDL
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
PWLYGIARNVLLEHYRARDHQTSIIKASAQQATDRAPDLTEAVDTRLSIHAALQRLNESD
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
REILLLHAWEGLDPAEIAQVLDISANNARVKLHRARTHLDQILSSSTTASVTTLSPRRG
CEEEEEEECCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA